Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 0.0e+00 1421.8 734 100.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 0.0e+00 1208.4 736 86.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 7.0e-288 993.8 744 72.2
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 4.9e-265 917.9 750 66.1
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.3e-259 899.0 749 65.8
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.2e-258 896.7 749 65.7
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-258 896.3 749 65.8
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.4e-256 887.9 749 65.0
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 5.0e-254 881.3 745 65.2
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 2.9e-233 812.4 747 60.4
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.3e-217 760.4 742 57.5
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 2.1e-215 753.1 748 56.8
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 6.9e-211 738.0 748 54.5
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 5.5e-208 728.4 751 55.3
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 1.0e-206 724.2 757 55.2
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 9.0e-203 711.1 752 54.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 9.0e-203 711.1 753 53.8
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.1e-198 695.3 735 52.8
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.1e-195 687.6 745 52.2
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 5.0e-193 678.7 746 52.7
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 8.5e-193 677.9 737 52.1
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 1.2e-191 674.1 746 53.5
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.1e-187 661.0 755 51.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 4.1e-187 659.1 743 51.4
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.5e-186 657.1 746 52.3
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.0e-186 656.8 654 56.6
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.6e-186 656.4 757 51.5
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 3.8e-185 652.5 755 51.1
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 7.9e-183 644.8 756 51.3
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 6.7e-182 641.7 716 52.1
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.1e-179 634.4 741 49.7
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 5.3e-179 632.1 748 50.3
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 5.9e-178 628.6 721 49.4
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.2e-176 622.9 749 48.1
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 4.7e-175 619.0 715 50.8
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.0e-174 617.8 732 48.6
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 3.0e-174 616.3 721 48.8
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 4.0e-174 615.9 747 47.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 8.8e-174 614.8 755 49.7
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.6e-173 613.2 747 47.7
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.8e-172 609.8 752 49.1
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.8e-169 599.4 732 49.2
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.2e-168 595.9 709 49.2
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 3.6e-167 592.8 732 46.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 2.2e-164 583.6 735 47.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 3.7e-164 582.8 749 47.9
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.8e-163 580.5 785 45.9
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 9.1e-155 551.6 752 45.3
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.7e-153 547.4 740 45.8
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.5e-152 544.3 748 45.7
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.3e-152 543.1 751 44.9
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.8e-150 537.3 793 44.1
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.8e-150 537.3 793 44.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.0e-149 533.9 746 45.0
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.2e-148 530.4 743 44.8
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.4e-147 527.7 747 44.8
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 4.1e-147 526.2 739 44.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 5.4e-147 525.8 766 44.1
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 7.0e-147 525.4 734 43.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 7.0e-147 525.4 747 44.8
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 1.8e-142 510.8 729 43.6
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 9.8e-141 505.0 801 41.9
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.0e-137 495.0 685 45.7
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 6.6e-137 492.3 748 42.8
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 6.2e-135 485.7 751 41.3
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 4.0e-134 483.0 762 41.3
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 4.9e-132 476.1 834 41.0
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.7e-129 467.6 740 42.4
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 5.1e-129 466.1 733 43.2
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 3.4e-125 453.4 735 42.2
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 5.4e-123 446.0 715 42.0
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 3.5e-122 443.4 608 45.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.9e-120 437.6 544 50.2
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 5.4e-115 419.5 731 40.4
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.2e-114 418.3 718 41.1
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.1e-110 405.2 301 71.1
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 2.6e-101 374.0 765 35.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 3.8e-100 370.2 332 60.8
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 5.3e-94 349.7 464 46.1
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.1e-86 323.6 372 52.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.4e-83 315.1 413 47.0
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 9.3e-83 312.4 504 42.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.5e-80 305.1 239 66.9
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 6.5e-76 289.7 305 51.1
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 6.1e-74 283.1 262 56.5
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 2.0e-53 214.9 260 46.9
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 2.2e-52 211.5 246 47.6
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.9e-43 181.8 315 41.3
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.5e-43 181.4 157 61.8
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 6.1e-42 176.8 158 59.5
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 5.0e-36 157.1 195 48.2
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 2.3e-28 131.7 98 65.3
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 1.9e-22 112.1 186 38.2
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 4.7e-18 97.4 83 59.0
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.3e-15 89.4 156 38.5
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.7e-15 89.0 84 48.8
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 1.3e-12 79.3 84 54.8
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 1.6e-10 72.4 76 48.7
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.1e-10 72.0 231 26.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.9e-07 60.8 117 32.5


User provided reference genes

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