Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 1.7e-63 246.1 153 100.0
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.0e-44 183.7 123 96.7
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 2.4e-33 146.0 125 84.8
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 5.8e-27 124.8 132 72.7
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 9.8e-27 124.0 126 75.4
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 8.3e-26 120.9 143 67.8
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 8.3e-26 120.9 143 67.8
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 8.3e-26 120.9 123 72.4
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.1e-25 120.6 99 83.8
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.1e-25 120.6 130 72.3
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 1.9e-25 119.8 137 66.4
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 3.2e-25 119.0 137 67.9
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 3.2e-25 119.0 98 82.7
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 2.0e-24 116.3 115 76.5
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.0e-24 114.8 97 85.6
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.0e-23 114.0 110 75.5
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.3e-23 113.6 115 74.8
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 2.3e-23 112.8 96 84.4
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.0e-23 112.5 98 78.6
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.0e-23 112.5 98 78.6
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 1.9e-22 109.8 97 79.4
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 1.9e-22 109.8 121 70.2
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 4.3e-22 108.6 98 74.5
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 2.1e-21 106.3 128 66.4
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 2.1e-21 106.3 94 81.9
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 3.6e-21 105.5 94 80.9
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 4.7e-21 105.1 123 69.1
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 6.2e-21 104.8 88 87.5
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.1e-20 104.0 99 76.8
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 1.1e-20 104.0 119 69.7
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 1.4e-20 103.6 100 76.0
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 3.1e-20 102.4 129 65.1
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 5.2e-20 101.7 94 83.0
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.2e-19 100.5 93 81.7
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 1.5e-19 100.1 107 71.0
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 2.0e-19 99.8 98 75.5
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 7.5e-19 97.8 91 80.2
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 9.8e-19 97.4 120 69.2
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.3e-18 97.1 93 76.3
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 2.2e-18 96.3 104 75.0
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 3.7e-18 95.5 130 64.6
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 4.9e-18 95.1 132 59.8
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 8.3e-18 94.4 91 80.2
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 8.3e-18 94.4 91 80.2
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 1.1e-17 94.0 104 72.1
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.9e-17 93.2 109 67.9
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 3.2e-17 92.4 97 77.3
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 3.2e-17 92.4 97 77.3
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 4.1e-17 92.0 88 75.0
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.2e-16 90.5 91 78.0
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.2e-16 90.5 114 65.8
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.6e-16 90.1 90 77.8
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.7e-16 89.4 98 70.4
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.0e-15 87.4 91 78.0
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.0e-15 87.4 91 78.0
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.0e-15 87.4 158 50.6
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 1.3e-15 87.0 154 51.9
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 3.0e-15 85.9 94 74.5
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 8.6e-15 84.3 100 70.0
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.1e-14 84.0 104 65.4
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.1e-14 84.0 148 54.7
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.5e-14 83.6 107 66.4
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 2.5e-14 82.8 140 57.1
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 2.5e-14 82.8 94 71.3
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 9.5e-14 80.9 164 52.4
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.2e-13 80.5 81 79.0
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 2.1e-13 79.7 100 68.0
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 3.6e-13 79.0 156 50.0
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 3.6e-13 79.0 78 82.1
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 4.7e-13 78.6 95 70.5
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 4.7e-13 78.6 54 68.5
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 4.7e-13 78.6 113 61.1
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 6.2e-13 78.2 107 65.4
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 1.4e-12 77.0 165 51.5
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 4.0e-12 75.5 145 51.0
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 6.8e-12 74.7 93 68.8
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 6.8e-12 74.7 93 69.9
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 3.4e-11 72.4 140 55.7
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 2.2e-10 69.7 97 40.2
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 4.9e-10 68.6 92 69.6
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 8.4e-10 67.8 77 45.5
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 8.4e-10 67.8 73 49.3
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 1.1e-09 67.4 78 44.9
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.4e-09 67.0 122 52.5
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.9e-09 66.6 41 70.7
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 9.2e-09 64.3 140 51.4
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.2e-08 63.9 39 66.7
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 2.1e-08 63.2 49 57.1
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 7.8e-08 61.2 95 34.7
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 7.8e-08 61.2 41 65.9
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.3e-07 60.5 49 57.1
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.3e-07 60.5 41 63.4
Ca_18542_v3 Cicer arietinum L. HOM05D021202 ORTHO05D009769 6.6e-07 58.2 92 37.0
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 2.5e-06 56.2 57 49.1
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 5.6e-06 55.1 84 64.3
TAR075G0006 Trochodendron aralioides HOM05D007781 ORTHO05D002106 5.6e-06 55.1 73 69.9
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 7.3e-06 54.7 34 64.7
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 7.3e-06 54.7 34 64.7
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 7.3e-06 54.7 105 58.1


User provided reference genes

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