Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 0.0e+00 1505.7 801 100.0
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 7.3e-291 1003.8 785 72.9
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 1.7e-207 726.9 808 55.9
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 2.5e-198 696.4 841 53.3
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 8.1e-189 664.8 854 51.1
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.0e-187 660.2 868 50.1
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 1.7e-183 647.1 833 50.9
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 6.9e-180 635.2 504 73.4
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.9e-177 627.1 853 49.4
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 6.5e-162 575.5 917 44.7
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 1.1e-108 398.7 868 39.3
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 1.5e-105 388.3 841 38.0
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 1.6e-104 384.8 859 36.8
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 4.7e-104 383.3 863 37.7
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 2.6e-102 377.5 851 36.1
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 1.2e-99 368.6 818 38.0
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 1.1e-97 362.1 802 38.4
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 3.3e-97 360.5 847 37.2
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 1.2e-96 358.6 841 37.0
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 5.2e-95 353.2 894 36.2
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 1.7e-93 348.2 977 33.9
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 6.4e-93 346.3 813 35.5
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 2.3e-90 337.8 422 51.2
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 1.1e-89 335.5 835 35.6
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 2.8e-88 330.9 832 34.9
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 2.9e-85 320.9 814 34.8
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 4.9e-85 320.1 835 34.7
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 5.4e-84 316.6 816 35.2
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 3.5e-83 313.9 800 34.5
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 6.6e-82 309.7 842 33.4
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 1.5e-81 308.5 807 34.3
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 1.1e-79 302.4 843 34.5
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 1.8e-79 301.6 789 36.2
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 2.0e-78 298.1 870 33.0
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 8.4e-77 292.7 800 34.6
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 3.9e-74 283.9 800 33.4
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 1.2e-72 278.9 835 32.9
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 2.8e-72 277.7 788 34.3
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 3.6e-72 277.3 875 32.8
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 6.2e-72 276.6 800 32.1
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.5e-70 271.9 795 32.8
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 4.4e-70 270.4 786 33.7
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 6.0e-67 260.0 957 30.9
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 7.8e-67 259.6 852 31.7
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 3.4e-62 244.2 815 33.5
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 2.4e-60 238.0 788 30.8
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 3.2e-60 237.7 801 32.0
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 9.3e-60 236.1 843 28.9
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 2.1e-56 224.9 823 30.9
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.8e-56 224.6 838 29.5
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 2.6e-54 218.0 352 42.9
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 4.5e-54 217.2 815 30.7
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 2.2e-53 214.9 814 29.9
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 1.4e-52 212.2 914 28.8
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 1.9e-52 211.8 872 28.0
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 3.2e-52 211.1 895 28.5
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 1.0e-50 206.1 173 69.4
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 1.9e-49 201.8 839 29.0
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 2.4e-47 194.9 828 30.1
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 2.4e-47 194.9 847 29.5
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 2.9e-45 188.0 264 46.6
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 8.4e-45 186.4 873 28.8
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 8.4e-45 186.4 931 27.8
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 2.5e-44 184.9 903 27.1
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 3.2e-44 184.5 841 28.7
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 2.7e-43 181.4 846 27.3
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 3.5e-43 181.0 845 29.0
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 1.3e-42 179.1 858 28.4
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 1.1e-41 176.0 758 26.8
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 4.3e-41 174.1 841 28.3
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.3e-40 172.6 590 30.2
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 8.2e-40 169.9 889 26.3
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 5.3e-39 167.2 563 32.7
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 4.5e-38 164.1 898 25.9
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 1.3e-37 162.5 836 26.7
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 8.5e-37 159.8 881 27.1
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 7.2e-36 156.8 891 26.9
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 5.1e-34 150.6 833 26.8
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 7.4e-33 146.7 273 41.4
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 9.7e-33 146.4 129 62.0
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 1.7e-32 145.6 595 27.9
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 1.8e-31 142.1 387 31.0
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 4.1e-31 141.0 878 25.7
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 9.1e-31 139.8 817 26.6
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 2.0e-30 138.7 797 26.6
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 3.4e-30 137.9 152 54.6
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 6.5e-29 133.7 396 31.8
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 2.5e-28 131.7 219 39.7
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 1.2e-27 129.4 817 26.4
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 1.8e-26 125.6 152 48.7
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 5.7e-25 120.6 873 25.3
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 9.7e-25 119.8 95 65.3
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 8.2e-24 116.7 111 57.7
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 1.1e-23 116.3 779 24.6
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 3.1e-23 114.8 811 23.9
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 1.2e-22 112.8 123 52.8
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 1.6e-19 102.4 324 32.1
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 1.6e-19 102.4 794 25.7
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 8.0e-19 100.1 771 25.2
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 8.0e-19 100.1 98 57.1
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 1.1e-17 96.3 247 34.8
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 7.4e-17 93.6 188 38.8
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.2e-16 92.0 802 24.4
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 6.3e-16 90.5 127 44.1
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.0e-14 85.5 196 36.2
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 4.5e-14 84.3 119 42.9
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.2e-13 82.0 135 40.0
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 1.1e-12 79.7 65 66.2
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 1.9e-12 79.0 161 38.5
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.5e-12 78.6 68 51.5
BcaC09g51502 Brassica carinata HOM05D010718 ORTHO05D008037 8.8e-10 70.1 306 29.4
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 1.4e-07 62.8 52 53.8
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 1.8e-07 62.4 52 53.8
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 2.0e-06 58.9 36 80.6


User provided reference genes

Program Settings