Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.6e-133 479.2 325 100.0
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.2e-130 470.3 327 98.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.7e-127 459.1 325 95.4
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.0e-113 411.8 314 93.3
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 3.2e-112 409.1 325 86.8
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 6.1e-111 404.8 325 86.5
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.5e-109 400.2 325 85.2
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.7e-108 396.7 325 85.2
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 6.3e-108 394.8 323 85.8
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.4e-107 393.7 325 83.7
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.5e-106 389.0 323 84.8
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 4.5e-106 388.7 324 83.0
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.3e-105 386.3 324 84.3
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.8e-105 385.6 323 83.3
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 8.6e-105 384.4 323 83.0
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 7.3e-104 381.3 323 81.7
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 8.0e-103 377.9 323 84.2
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.2e-101 374.0 323 84.8
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.0e-101 373.2 325 81.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 2.6e-101 372.9 325 81.8
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.2e-100 369.8 323 81.1
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.9e-100 369.4 323 81.1
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.9e-100 369.4 323 81.1
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 3.2e-99 365.9 323 80.5
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.2e-98 364.0 313 84.3
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 6.6e-97 358.2 323 82.4
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 7.3e-96 354.8 323 82.0
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 4.7e-95 352.1 325 79.7
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 5.2e-94 348.6 325 79.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.2e-93 347.4 315 79.7
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.5e-93 347.1 315 79.7
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 1.7e-92 343.6 323 78.3
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 3.7e-92 342.4 323 80.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 4.6e-90 335.5 325 77.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.1e-88 330.9 325 79.1
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 5.6e-88 328.6 323 77.7
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.0e-86 322.4 323 77.7
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.2e-85 320.9 323 76.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 5.8e-85 318.5 325 75.7
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 2.9e-84 316.2 286 84.3
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.7e-84 315.8 324 76.5
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 8.3e-84 314.7 324 76.5
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 4.1e-83 312.4 323 76.5
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.6e-82 310.5 323 76.2
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 4.6e-82 308.9 323 76.8
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.3e-81 306.6 323 75.5
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.5e-80 303.9 259 94.2
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.6e-80 302.0 259 93.4
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.3e-80 301.6 258 93.8
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-79 300.8 259 93.1
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.1e-79 300.1 259 93.1
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 2.1e-79 300.1 275 81.1
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.8e-79 299.7 323 74.3
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.4e-78 297.4 312 76.0
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.6e-77 293.1 323 74.3
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 3.5e-74 282.7 325 72.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 3.5e-74 282.7 325 72.6
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 2.3e-73 280.0 325 72.0
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.9e-72 276.9 257 87.5
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.6e-71 273.9 323 71.5
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.1e-71 273.5 325 70.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.1e-70 271.2 259 86.5
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.8e-70 270.4 257 86.0
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 6.9e-70 268.5 255 87.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 6.9e-70 268.5 255 85.5
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.2e-69 267.7 259 84.9
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 2.0e-69 266.9 313 70.9
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 2.0e-69 266.9 322 64.9
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 2.0e-69 266.9 255 86.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 2.0e-69 266.9 255 86.7
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.0e-69 266.9 260 83.8
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 9.9e-69 264.6 258 84.1
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.3e-68 264.2 254 85.8
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 4.9e-68 262.3 257 85.2
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 8.4e-68 261.5 259 82.6
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 1.4e-67 260.8 258 83.3
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.9e-67 260.4 250 87.6
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.2e-67 259.2 257 83.3
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.6e-66 257.3 258 83.3
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-66 257.3 258 83.3
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.6e-66 257.3 258 83.3
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.6e-66 257.3 258 83.3
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.6e-66 257.3 258 83.3
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.7e-66 256.5 250 86.4
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 7.8e-66 255.0 257 83.7
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 7.8e-66 255.0 256 84.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 6.6e-65 251.9 250 84.4
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.5e-64 250.8 324 66.4
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 5.6e-64 248.8 149 79.9
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 9.6e-64 248.1 149 80.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.1e-63 246.9 149 78.5
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 3.6e-63 246.1 338 55.6
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 6.2e-63 245.4 149 77.9
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 6.2e-63 245.4 149 78.5
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.8e-62 243.8 149 77.2
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.8e-62 243.8 149 77.2
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 4.0e-62 242.7 149 76.5
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 6.9e-62 241.9 149 77.2
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 6.9e-62 241.9 149 75.8
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 6.9e-62 241.9 255 81.2
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.6e-61 240.0 151 74.2
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 4.5e-61 239.2 151 74.8
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 4.5e-61 239.2 258 78.7
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.6e-61 238.4 151 72.2
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.2e-60 236.9 151 70.9
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-59 234.2 149 73.8
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 151 72.2
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 151 72.2
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.9e-59 233.8 149 73.8
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.4e-59 233.4 324 62.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 2.7e-58 229.9 150 72.0
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.0e-57 226.5 324 62.3
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 5.3e-54 215.7 209 83.7
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.2e-52 210.3 324 62.3
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.4e-51 206.8 311 65.0
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.0e-45 187.2 315 56.8
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.3e-44 184.5 149 61.1
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.8e-44 183.0 149 57.7
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 8.4e-44 181.8 312 59.0
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 3.2e-43 179.9 121 69.4
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 3.2e-43 179.9 93 86.0
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.7e-42 176.8 311 42.8
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.5e-37 159.5 112 67.9
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.0e-33 148.3 320 31.9
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.1e-30 138.3 329 48.3
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.4e-30 137.1 93 64.5
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.3e-28 131.3 120 55.8
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.4e-27 127.9 320 28.8
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.7e-12 77.8 87 47.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 3.8e-12 76.6 133 39.8
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.8e-12 76.6 87 51.7
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 1.9e-11 74.3 77 51.9
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 5.5e-11 72.8 73 52.1
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 7.2e-11 72.4 111 42.3
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.0e-09 68.6 88 40.9
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 4.0e-09 66.6 76 43.4
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 8.8e-09 65.5 37 78.4
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-08 64.7 61 49.2
ATR0829G129 Amborella trichopoda HOM05D050206 ORTHO05D038281 6.3e-07 59.3 315 24.1
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 8.2e-07 58.9 140 28.6
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.2e-07 58.9 36 72.2
Ca_20890_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 9.1e-06 55.5 92 35.9


User provided reference genes

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