Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 3.9e-219 764.6 411 100.0
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 7.1e-181 637.5 411 87.1
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.4e-159 565.5 447 73.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.1e-130 470.7 451 61.9
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 5.4e-120 435.3 445 60.4
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.9e-117 426.8 456 59.4
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.2e-117 424.9 445 59.8
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 9.4e-117 424.5 457 59.5
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.8e-115 420.2 431 58.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.6e-114 416.4 454 59.9
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.4e-114 416.0 452 58.2
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.3e-113 414.1 441 61.5
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 8.3e-113 411.4 449 57.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.8e-112 410.2 449 61.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.7e-111 406.4 327 69.1
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.5e-111 406.0 429 59.9
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 4.5e-111 405.6 449 59.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 4.5e-111 405.6 453 55.6
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 7.7e-111 404.8 429 61.1
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.5e-109 400.6 421 61.8
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.1e-108 396.7 437 56.1
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.8e-108 396.4 446 55.6
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.0e-108 394.8 429 58.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.0e-107 394.4 328 66.2
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.8e-107 393.7 414 59.2
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.5e-106 390.6 429 57.6
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.6e-106 389.8 447 55.5
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 9.8e-106 387.9 451 56.5
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 3.7e-105 386.0 437 57.7
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.2e-103 380.9 441 53.3
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.6e-103 380.6 465 55.7
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 6.6e-102 375.2 307 68.1
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 7.3e-101 371.7 428 52.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.2e-100 368.6 447 52.6
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 8.0e-100 368.2 348 61.5
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 8.0e-100 368.2 344 60.5
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.8e-99 367.1 521 49.9
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.1e-99 366.3 441 56.2
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.4e-98 362.5 335 61.2
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 4.4e-98 362.5 315 64.1
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 7.5e-98 361.7 445 53.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.3e-97 360.9 316 63.0
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.3e-97 360.9 347 58.8
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.4e-96 356.7 427 56.4
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 7.0e-96 355.1 456 52.0
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.7e-95 353.2 386 57.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 6.0e-95 352.1 458 49.1
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.7e-94 350.5 281 67.6
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.7e-92 342.4 290 65.9
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.5e-90 337.4 437 50.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 2.6e-90 336.7 428 50.9
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.3e-89 334.3 330 57.9
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.7e-89 334.0 442 50.5
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 2.2e-89 333.6 329 58.4
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.2e-89 333.6 331 57.4
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.9e-89 333.2 330 57.6
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 4.1e-88 329.3 469 46.9
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 4.6e-87 325.9 348 56.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 4.6e-87 325.9 421 53.0
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 4.6e-87 325.9 384 52.6
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.0e-86 324.7 379 52.0
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 3.0e-86 323.2 344 57.3
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 5.6e-85 318.9 436 46.1
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 9.5e-85 318.2 423 49.9
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 3.6e-84 316.2 332 55.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.4e-83 314.3 443 50.3
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.3e-83 313.5 483 44.5
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.1e-83 313.2 432 48.1
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-82 311.2 312 59.0
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.2e-82 311.2 434 48.8
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.9e-81 305.8 470 44.3
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.4e-80 304.3 331 54.7
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.1e-79 300.4 310 56.5
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.7e-79 300.1 480 44.2
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 5.1e-78 295.8 456 47.6
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 6.6e-78 295.4 356 50.0
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 6.6e-78 295.4 305 55.4
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.1e-77 294.7 217 72.4
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 3.3e-77 293.1 489 44.2
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.3e-77 292.0 356 50.6
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.6e-76 290.8 305 55.4
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 3.6e-76 289.7 306 54.9
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.6e-76 289.7 354 50.3
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.2e-76 288.9 487 42.9
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 8.1e-76 288.5 297 57.2
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.1e-75 288.1 245 62.4
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.8e-75 287.3 418 51.4
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 4.0e-75 286.2 267 60.7
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.2e-74 284.6 338 50.3
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.0e-74 283.9 327 53.2
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.6e-74 283.5 380 49.7
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.6e-74 283.5 189 74.6
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.4e-74 283.1 345 51.0
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 1.7e-73 280.8 312 51.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.2e-73 280.4 436 45.0
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-73 280.4 419 49.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 2.2e-73 280.4 334 50.3
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.9e-73 280.0 446 43.9
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.8e-73 279.6 380 49.2
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 5.4e-72 275.8 598 34.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 2.7e-71 273.5 294 56.1
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.0e-70 271.6 319 57.4
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.3e-70 271.2 411 47.4
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.3e-70 270.4 294 55.8
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.3e-70 270.4 294 55.8
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 5.6e-69 265.8 235 60.0
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.3e-68 264.6 300 54.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.2e-66 258.1 310 52.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-63 248.1 305 50.2
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.7e-63 246.9 440 43.6
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 4.6e-63 246.1 344 49.4
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 5.1e-62 242.7 279 52.0
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.2e-55 221.5 240 51.2
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.3e-54 217.2 292 54.1
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 9.0e-51 205.3 289 47.8
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.4e-50 203.4 219 53.0
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 2.5e-45 187.2 189 56.6
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 3.7e-44 183.3 198 53.5
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.4e-43 181.4 355 40.3
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.1e-43 179.9 311 43.4
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 9.0e-43 178.7 152 65.1
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 2.0e-42 177.6 188 52.7
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 5.9e-42 176.0 141 68.8
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 8.4e-41 172.2 373 41.0
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.1e-40 171.8 309 41.1
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 7.2e-40 169.1 215 46.0
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.5e-39 166.8 366 35.0
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.8e-38 164.5 251 40.6
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.0e-34 151.0 143 58.0
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.2e-33 147.5 437 33.6
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 6.5e-33 146.0 160 50.6
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.4e-32 144.8 301 37.2
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.9e-31 139.0 250 37.6
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.4e-30 138.3 154 50.6
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.1e-29 135.2 103 69.9
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 5.3e-27 126.3 71 83.1
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 1.2e-26 125.2 194 43.3
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.0e-26 124.4 71 81.7
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 5.9e-26 122.9 233 36.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.8e-25 120.2 69 79.7
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.1e-23 114.4 95 63.2
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.1e-23 112.8 70 75.7
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 7.9e-23 112.5 98 53.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.0e-22 110.5 120 50.8
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.6e-21 107.5 119 50.4
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 4.4e-21 106.7 154 40.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.5e-18 97.1 115 47.0
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.9e-16 91.3 82 56.1
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 9.1e-11 72.4 254 33.1
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.2e-10 72.0 99 37.4
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 1.6e-10 71.6 96 47.9
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.0e-10 71.2 154 30.5
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.3e-09 68.6 257 31.9
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.4e-08 62.4 242 30.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-07 62.0 242 30.2
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-07 62.0 242 30.2
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-07 62.0 72 51.4
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.1e-07 61.2 71 47.9
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.7e-07 60.1 100 45.0
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.1e-07 59.7 83 50.6
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.2e-06 56.6 258 28.7
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 8.8e-06 55.8 153 30.1


User provided reference genes

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