Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 8.6e-60 233.4 114 100.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.2e-47 192.2 112 86.6
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.2e-47 192.2 112 86.6
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.4e-38 162.9 112 76.8
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 9.6e-27 123.6 99 60.6
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.6e-24 115.5 108 55.6
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 5.8e-24 114.4 82 68.3
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.2e-22 108.6 102 55.9
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 4.2e-22 108.2 95 57.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.1e-22 107.5 82 59.8
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 9.3e-22 107.1 104 52.9
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.2e-21 106.7 107 60.7
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-21 106.7 79 63.3
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-21 106.7 95 57.9
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 2.1e-21 105.9 118 58.5
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.5e-21 105.1 107 59.8
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 3.5e-21 105.1 102 53.9
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.5e-21 105.1 106 54.7
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.0e-21 104.4 96 60.4
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 7.8e-21 104.0 100 52.0
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.8e-21 104.0 96 60.4
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.0e-20 103.6 101 54.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.0e-20 103.6 104 51.9
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.7e-20 102.8 106 55.7
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.7e-20 102.8 78 57.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 1.7e-20 102.8 83 60.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.3e-20 102.4 80 63.8
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.0e-20 102.1 84 59.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 3.9e-20 101.7 91 56.0
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 5.1e-20 101.3 105 53.3
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.5e-19 99.8 121 49.6
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.5e-19 99.8 73 60.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.9e-19 99.4 106 51.9
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-19 99.0 91 56.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 3.3e-19 98.6 93 59.1
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.6e-19 97.8 104 53.8
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.6e-19 97.1 95 54.7
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.6e-18 96.3 102 52.9
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.1e-18 95.9 61 72.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.1e-18 95.9 92 55.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-18 95.9 63 66.7
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.1e-18 95.9 74 59.5
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 4.8e-18 94.7 86 51.2
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.8e-18 94.7 86 51.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 6.2e-18 94.4 91 57.1
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-17 93.6 72 55.6
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 2.4e-17 92.4 63 65.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.4e-17 92.4 63 65.1
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 3.1e-17 92.0 102 49.0
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.0e-17 91.7 81 54.3
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.9e-17 90.9 104 51.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 6.9e-17 90.9 88 55.7
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 9.0e-17 90.5 85 51.8
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.2e-16 90.1 97 51.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.2e-16 90.1 58 72.4
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.2e-16 90.1 58 70.7
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.5e-16 89.7 98 49.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.5e-16 89.7 92 50.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-16 89.7 89 52.8
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-16 89.4 86 52.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-16 89.4 95 56.8
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.0e-16 89.4 103 52.4
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.6e-16 89.0 85 51.8
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.6e-16 89.0 95 56.8
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.6e-16 89.0 58 72.4
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.6e-16 89.0 113 49.6
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.4e-16 88.6 112 46.4
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 4.5e-16 88.2 84 51.2
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 5.8e-16 87.8 76 52.6
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 5.8e-16 87.8 115 46.1
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 5.8e-16 87.8 79 49.4
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.6e-16 87.4 107 46.7
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 7.6e-16 87.4 99 48.5
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.9e-16 87.0 95 55.8
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.3e-15 86.7 81 58.0
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.3e-15 86.7 108 47.2
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.2e-15 85.9 106 49.1
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 2.2e-15 85.9 95 48.4
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.9e-15 85.5 76 51.3
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-15 85.1 110 48.2
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.8e-15 85.1 110 48.2
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 4.9e-15 84.7 100 49.0
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 6.4e-15 84.3 95 47.4
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 8.4e-15 84.0 108 44.4
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 8.4e-15 84.0 111 48.6
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.1e-14 83.6 77 57.1
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-14 83.6 78 48.7
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.4e-14 83.2 112 44.6
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.4e-14 83.2 112 44.6
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-14 82.8 77 57.1
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-14 82.8 88 54.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.9e-14 82.8 91 52.7
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.9e-14 82.8 88 54.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.4e-14 82.4 89 51.7
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 4.2e-14 81.6 99 46.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 4.2e-14 81.6 88 51.1
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 5.4e-14 81.3 74 50.0
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.4e-14 81.3 92 52.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.4e-14 81.3 88 52.3
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 5.4e-14 81.3 75 49.3
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.1e-14 80.9 110 46.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 9.3e-14 80.5 75 54.7
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-13 80.1 59 64.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.2e-13 80.1 114 43.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.7e-13 79.0 99 44.4
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 4.6e-13 78.2 87 49.4
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 4.6e-13 78.2 62 58.1
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 6.0e-13 77.8 83 44.6
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 7.9e-13 77.4 58 63.8
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.9e-13 77.4 85 51.8
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.0e-12 77.0 96 45.8
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.0e-12 77.0 85 51.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.3e-12 76.6 75 46.7
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.3e-12 76.6 107 45.8
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.8e-12 76.3 74 54.1
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.1e-12 74.7 69 47.8
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.1e-12 74.7 69 47.8
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 6.7e-12 74.3 85 48.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-12 74.3 101 43.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 8.7e-12 73.9 68 55.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.9e-11 72.8 104 41.3
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.9e-11 72.8 77 44.2
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.3e-11 72.0 70 52.9
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 3.3e-11 72.0 88 43.2
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.3e-11 72.0 53 56.6
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 4.3e-11 71.6 56 57.1
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 7.4e-11 70.9 81 51.9
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 7.4e-11 70.9 91 47.3
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 7.4e-11 70.9 107 42.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 7.4e-11 70.9 105 43.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.3e-10 70.1 79 46.8
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.1e-10 69.3 78 44.9
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 2.1e-10 69.3 111 45.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.8e-10 68.9 81 46.9
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 3.6e-10 68.6 48 64.6
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.2e-10 67.8 111 42.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.1e-09 67.0 111 44.1
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.1e-09 65.5 81 51.9
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 6.9e-09 64.3 97 42.3
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 6.9e-09 64.3 44 70.5
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.0e-09 63.9 100 41.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.4e-08 62.0 89 47.2
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.4e-08 62.0 88 43.2
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.8e-08 61.2 68 51.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 7.6e-08 60.8 42 64.3
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 9.9e-08 60.5 63 58.7
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 2.9e-07 58.9 62 45.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 4.9e-07 58.2 74 43.2


User provided reference genes

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