Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 8.6e-45 183.3 97 100.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 2.4e-34 148.7 97 85.6
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 2.4e-34 148.7 97 85.6
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.6e-30 136.0 99 76.8
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 3.0e-21 105.1 103 61.2
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 8.7e-21 103.6 102 62.7
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.9e-20 102.4 98 63.3
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.3e-20 101.7 102 61.8
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.6e-20 100.1 102 60.8
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.6e-20 100.1 102 60.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.1e-19 99.0 102 59.8
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 2.1e-19 99.0 96 57.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.1e-18 96.7 97 56.7
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 3.1e-18 95.1 103 61.2
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 4.0e-18 94.7 103 53.4
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 6.9e-18 94.0 97 60.8
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.2e-17 93.2 103 57.3
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.5e-17 92.8 98 56.1
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.6e-17 92.0 97 55.7
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 7.6e-17 90.5 97 52.6
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.0e-16 90.1 101 59.4
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.3e-16 89.7 104 52.9
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.9e-16 88.6 99 58.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.9e-16 88.6 98 53.1
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 2.9e-16 88.6 106 54.7
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.9e-16 87.8 97 55.7
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 6.5e-16 87.4 90 56.7
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 8.4e-16 87.0 97 56.7
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 8.4e-16 87.0 98 53.1
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.1e-15 86.7 103 51.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.4e-15 86.3 99 57.6
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.4e-15 86.3 99 57.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.9e-15 85.9 88 56.8
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.5e-15 85.5 108 52.8
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 9.3e-15 83.6 99 51.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 9.3e-15 83.6 97 50.5
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 9.3e-15 83.6 102 50.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.3e-15 83.6 97 53.6
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.3e-15 83.6 97 54.6
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.2e-14 83.2 102 50.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 1.6e-14 82.8 91 58.2
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 2.1e-14 82.4 98 49.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 2.1e-14 82.4 102 49.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 3.5e-14 81.6 92 52.2
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.5e-14 81.6 93 53.8
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 6.0e-14 80.9 103 50.5
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 6.0e-14 80.9 98 51.0
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-13 80.1 90 52.2
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.3e-13 79.7 106 48.1
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.3e-13 79.0 99 55.6
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-13 79.0 88 53.4
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-13 79.0 88 54.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.3e-13 79.0 96 49.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 3.0e-13 78.6 89 53.9
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 3.0e-13 78.6 101 48.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 3.9e-13 78.2 106 48.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.1e-13 77.8 93 53.8
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 5.1e-13 77.8 106 50.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.1e-13 77.8 94 50.0
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.1e-13 77.8 98 51.0
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 6.7e-13 77.4 90 53.3
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.5e-12 76.3 94 48.9
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-12 75.9 97 46.4
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-12 75.9 99 48.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.5e-12 75.5 88 50.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 2.5e-12 75.5 103 46.6
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.5e-12 75.5 94 51.1
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.3e-12 74.7 98 46.9
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 4.3e-12 74.7 94 50.0
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.3e-12 74.7 94 50.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 7.4e-12 73.9 87 55.2
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 7.4e-12 73.9 60 68.3
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.3e-11 73.2 106 49.1
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.6e-11 72.8 100 45.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 2.8e-11 72.0 98 44.9
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.8e-11 72.0 97 45.4
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.7e-11 71.6 89 43.8
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.8e-11 71.2 101 53.5
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 6.3e-11 70.9 93 46.2
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 1.1e-10 70.1 98 45.9
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.1e-10 70.1 106 45.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.1e-10 70.1 98 44.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-10 69.7 98 46.9
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-10 69.7 77 49.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.8e-10 69.3 101 53.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.8e-10 69.3 55 67.3
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.4e-10 68.9 92 47.8
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 2.4e-10 68.9 98 43.9
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 2.4e-10 68.9 98 43.9
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 2.4e-10 68.9 76 50.0
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.1e-10 68.2 97 45.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 5.3e-10 67.8 98 45.9
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 5.3e-10 67.8 98 45.9
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.3e-10 67.8 80 50.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 5.3e-10 67.8 55 61.8
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 6.9e-10 67.4 98 44.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 6.9e-10 67.4 98 44.9
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 6.9e-10 67.4 98 44.9
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 98 44.9
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.5e-09 66.2 57 63.2
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-09 65.9 99 46.5
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 2.0e-09 65.9 99 46.5
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 2.0e-09 65.9 99 46.5
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 2.0e-09 65.9 103 45.6
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 3.4e-09 65.1 99 44.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 7.6e-09 63.9 99 43.4
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.6e-09 63.9 78 46.2
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.0e-08 63.5 95 44.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 41.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 41.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.7e-08 62.8 98 41.8
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.9e-08 62.0 55 60.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 3.8e-08 61.6 82 43.9
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 3.8e-08 61.6 53 58.5
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 6.5e-08 60.8 98 40.8
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 6.5e-08 60.8 98 40.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.5e-08 60.8 65 60.0
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 8.5e-08 60.5 76 52.6
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 8.5e-08 60.5 98 40.8
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.4e-07 59.7 99 40.4
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 1.9e-07 59.3 108 41.7
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.5e-07 58.9 109 38.5
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.2e-07 58.5 99 40.4
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 9.3e-07 57.0 105 40.0
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 9.3e-07 57.0 96 42.7
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.3e-07 57.0 94 44.7
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 9.3e-07 57.0 98 43.9
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 9.3e-07 57.0 91 41.8
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 1.6e-06 56.2 96 42.7
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 1.6e-06 56.2 96 42.7
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 2.1e-06 55.8 96 42.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 2.1e-06 55.8 56 57.1
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 3.6e-06 55.1 96 41.7
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 7.9e-06 53.9 101 43.6


User provided reference genes

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