Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1268000 Malus domestica HOM05D014736 ORTHO05D009761 8.5e-128 460.7 293 100.0
MD05G1292200 Malus domestica HOM05D014736 ORTHO05D009761 7.0e-74 281.6 290 69.7
Prupe.4G073200 Prunus persica HOM05D014736 ORTHO05D009761 3.6e-62 242.7 269 60.2
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 1.9e-34 150.6 192 51.0
FAN25G1841 Fragaria x ananassa HOM05D014736 ORTHO05D009761 4.2e-34 149.4 308 43.8
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 3.5e-33 146.4 192 50.0
FAN21G2246 Fragaria x ananassa HOM05D014736 ORTHO05D009761 1.9e-31 140.6 179 52.0
RcHm_v2.0_Chr5g0012861 Rosa chinensis HOM05D014736 ORTHO05D009761 2.0e-28 130.6 305 43.3
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 6.1e-25 119.0 269 37.5
TWI73G0525 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 2.0e-20 104.0 278 32.7
FAN16G2400 Fragaria x ananassa HOM05D014736 ORTHO05D009761 1.1e-18 98.2 154 48.1
CiPaw.10G096600 Carya illinoinensis HOM05D009013 ORTHO05D009761 9.4e-18 95.1 270 31.5
CANSAT35G0309 Cannabis sativa HOM05D009013 ORTHO05D009761 1.2e-17 94.7 269 37.5
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 1.6e-17 94.4 265 37.0
Cfa001036 Carpinus fangiana HOM05D009013 ORTHO05D009761 3.6e-17 93.2 271 37.3
Dinv03635 Davidia involucrata HOM05D009013 ORTHO05D009761 3.6e-17 93.2 283 37.5
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 1.0e-16 91.7 118 41.5
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 6.7e-16 89.0 155 35.5
Glyma.09G085700 Glycine max HOM05D009013 ORTHO05D009761 4.3e-15 86.3 261 32.2
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 5.7e-15 85.9 262 30.2
VMungo1309G2255 Vigna mungo HOM05D009013 ORTHO05D009761 1.7e-14 84.3 249 31.7
Lalb_Chr07g0186121 Lupinus albus HOM05D009013 ORTHO05D009761 2.2e-14 84.0 245 31.4
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 2.8e-14 83.6 193 34.2
Lalb_Chr12g0204801 Lupinus albus HOM05D009013 ORTHO05D009761 6.3e-14 82.4 258 32.2
Duzib160G0535 Durio zibethinus HOM05D009852 ORTHO05D009761 1.1e-13 81.6 243 32.9
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 2.4e-13 80.5 265 36.2
Hma1.2p1_0015F.1_g010420 Hydrangea macrophylla HOM05D009013 ORTHO05D009761 3.1e-13 80.1 151 38.4
Lj4g0005206 Lotus japonicus HOM05D009013 ORTHO05D009761 9.1e-13 78.6 259 30.1
Manes.15G116600 Manihot esculenta HOM05D009852 ORTHO05D009761 1.5e-12 77.8 305 27.9
Eucgr.D00345 Eucalyptus grandis HOM05D014736 ORTHO05D009761 4.5e-12 76.3 98 40.8
Thecc.06G158200 Theobroma cacao HOM05D009852 ORTHO05D009761 2.9e-11 73.6 264 34.5
TWI09G1113 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 3.8e-11 73.2 281 28.5
Lalb_Chr13g0295461 Lupinus albus HOM05D009013 ORTHO05D009761 1.1e-10 71.6 200 35.0
Potri.001G354600 Populus trichocarpa HOM05D009852 ORTHO05D009761 1.1e-10 71.6 279 30.5
TWI09G0214 Tripterygium wilfordii HOM05D009852 ORTHO05D009761 1.4e-10 71.2 281 28.1
Glyma.05G164200 Glycine max HOM05D009013 ORTHO05D009761 2.5e-10 70.5 187 35.3
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 3.2e-10 70.1 256 26.6
COL.COLO4_22804 Corchorus olitorius HOM05D009852 ORTHO05D009761 1.6e-09 67.8 168 32.7
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 1.6e-09 67.8 47 59.6
Duzib192G0106 Durio zibethinus HOM05D009852 ORTHO05D009761 2.1e-09 67.4 198 30.3
Gohir.D05G154000 Gossypium hirsutum HOM05D009852 ORTHO05D009761 2.7e-09 67.0 144 35.4
Gorai.009G158300 Gossypium raimondii HOM05D009852 ORTHO05D009761 2.7e-09 67.0 144 35.4
TPR.G22001 Trifolium pratense HOM05D009013 ORTHO05D009761 3.6e-09 66.6 260 26.2
DCAR_007913 Daucus carota HOM05D009013 ORTHO05D009761 6.1e-09 65.9 177 30.5
Atru.chr10.1414 Acer truncatum HOM05D009852 ORTHO05D009761 7.9e-09 65.5 253 30.0
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 1.0e-08 65.1 262 27.1
Duzib235G1088 Durio zibethinus HOM05D009852 ORTHO05D009761 1.0e-08 65.1 190 30.5
AT1G29530 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 1.8e-08 64.3 179 34.1
Potri.011G077700 Populus trichocarpa HOM05D009852 ORTHO05D009761 2.3e-08 63.9 287 29.3
BcaB02g09560 Brassica carinata HOM05D008719 ORTHO05D010898 3.0e-08 63.5 114 40.4
Medtr2g049330 Medicago truncatula HOM05D009013 ORTHO05D009761 3.0e-08 63.5 147 33.3
CSS0045433 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 3.9e-08 63.2 144 34.7
CSS0047309 Camellia sinensis var. sinensis HOM05D014645 ORTHO05D009761 3.9e-08 63.2 196 28.1
Lalb_Chr08g0233301 Lupinus albus HOM05D009013 ORTHO05D009761 6.7e-08 62.4 308 26.3
Manes.17G064400 Manihot esculenta HOM05D009852 ORTHO05D009761 6.7e-08 62.4 314 29.9
A08p25000 Brassica napus HOM05D008719 ORTHO05D010898 8.8e-08 62.0 126 34.9
BraA08t34455Z Brassica rapa HOM05D008719 ORTHO05D010898 8.8e-08 62.0 126 34.9
Gohir.A05G151600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 8.8e-08 62.0 130 36.9
Lalb_Chr23g0275971 Lupinus albus HOM05D009013 ORTHO05D009761 1.1e-07 61.6 284 26.4
Gorai.010G164100 Gossypium raimondii HOM05D009852 ORTHO05D009761 1.5e-07 61.2 185 28.6
Glyma.08G121600 Glycine max HOM05D009013 ORTHO05D009761 2.0e-07 60.8 198 31.8
Gohir.A10G031700 Gossypium hirsutum HOM05D009852 ORTHO05D009761 2.0e-07 60.8 66 43.9
Gohir.D06G140600 Gossypium hirsutum HOM05D009852 ORTHO05D009761 2.6e-07 60.5 185 28.1
TPR.G31355 Trifolium pratense HOM05D009013 ORTHO05D009761 3.3e-07 60.1 196 27.0
Carub.0001s2776 Capsella rubella HOM05D008719 ORTHO05D010898 4.4e-07 59.7 106 34.0
Gohir.D10G032500 Gossypium hirsutum HOM05D009852 ORTHO05D009761 7.4e-07 58.9 72 40.3
Gorai.011G034400 Gossypium raimondii HOM05D009852 ORTHO05D009761 7.4e-07 58.9 72 40.3
Psat1g020440 Pisum sativum HOM05D009013 ORTHO05D009761 9.7e-07 58.5 54 48.1
Sed0003972 Sechium edule HOM05D025335 ORTHO05D025087 9.7e-07 58.5 92 40.2
Sed0023686 Sechium edule HOM05D022667 ORTHO05D009761 9.7e-07 58.5 35 71.4
Carub.0004s1595 Capsella rubella HOM05D008719 ORTHO05D010898 1.7e-06 57.8 140 31.4
Psat1g018200 Pisum sativum HOM05D009013 ORTHO05D009761 2.2e-06 57.4 130 35.4
Actinidia07666 Actinidia chinensis HOM05D014645 ORTHO05D009761 2.8e-06 57.0 137 32.8
Aa31LG6G6070 Aethionema arabicum HOM05D008719 ORTHO05D010898 3.7e-06 56.6 105 37.1
PSO541G1916 Papaver somniferum HOM05D022831 ORTHO05D023597 3.7e-06 56.6 113 33.6
PSO675G7770 Papaver somniferum HOM05D022831 ORTHO05D023597 3.7e-06 56.6 113 33.6
BcaC01g00117 Brassica carinata HOM05D008719 ORTHO05D010898 4.8e-06 56.2 159 30.8
C03p75980 Brassica napus HOM05D008719 ORTHO05D010898 4.8e-06 56.2 158 31.6
BolC3t19849H Brassica oleracea HOM05D008719 ORTHO05D010898 4.8e-06 56.2 158 31.6
Thhalv10008596m.g Eutrema salsugineum HOM05D008719 ORTHO05D010898 4.8e-06 56.2 106 35.8
AL1G43370 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 6.3e-06 55.8 154 30.5
C07p16190 Brassica napus HOM05D008719 ORTHO05D010898 8.2e-06 55.5 103 38.8


User provided reference genes

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