Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.3e-208 730.7 844 100.0
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 2.5e-132 477.2 821 87.1
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.9e-108 397.9 821 82.9
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.4e-108 396.0 821 82.8
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.3e-107 395.2 811 83.2
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.9e-106 389.4 805 84.3
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.1e-87 328.9 821 73.4
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 8.5e-80 302.8 813 76.6
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.0e-77 295.8 828 72.3
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 2.6e-76 291.2 818 75.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 5.7e-76 290.0 812 76.5
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.7e-75 287.3 424 64.2
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 4.8e-75 287.0 807 73.4
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 6.3e-75 286.6 693 82.0
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.1e-74 285.8 778 75.6
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.4e-74 285.4 812 72.5
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 7.0e-74 283.1 798 75.4
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.7e-73 281.2 745 73.8
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.3e-72 278.9 798 75.2
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 2.9e-72 277.7 695 85.5
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.9e-72 277.7 784 78.1
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.9e-71 275.0 815 73.4
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 4.2e-71 273.9 688 84.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 7.2e-71 273.1 670 86.6
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.6e-70 271.9 672 82.6
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 1.6e-70 271.9 812 77.3
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 2.1e-70 271.6 812 71.7
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.1e-70 270.0 790 75.6
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.4e-69 268.9 836 70.7
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 3.0e-69 267.7 791 65.1
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 1.2e-68 265.8 747 78.8
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.7e-67 261.9 695 85.0
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 2.2e-67 261.5 690 81.7
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.2e-67 261.5 809 71.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 3.7e-67 260.8 814 75.4
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 4.1e-66 257.3 679 84.7
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 7.0e-66 256.5 786 77.1
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.0e-65 255.0 805 72.9
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-64 251.9 684 83.8
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-64 251.9 684 83.8
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.9e-64 251.1 820 71.3
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 2.5e-63 248.1 273 53.5
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.2e-63 247.3 665 83.0
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.6e-62 245.4 435 60.2
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 6.1e-62 243.4 821 72.7
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.3e-61 241.5 409 61.1
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.3e-61 241.5 270 50.7
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 6.8e-61 240.0 773 74.1
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 8.8e-61 239.6 692 80.1
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 8.8e-61 239.6 675 84.0
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 2.0e-60 238.4 697 70.4
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.3e-59 235.7 692 79.9
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.3e-59 235.7 208 60.1
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.7e-59 235.3 827 68.2
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.2e-59 235.0 675 75.3
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 2.8e-59 234.6 146 79.5
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.8e-58 231.9 812 74.4
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.8e-58 231.9 696 82.3
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 3.1e-58 231.1 671 84.2
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 4.1e-58 230.7 673 84.7
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 9.2e-58 229.6 679 83.9
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.7e-57 228.0 286 51.7
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 5.9e-57 226.9 120 90.8
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 7.8e-57 226.5 790 74.9
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 1.3e-56 225.7 697 79.6
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.3e-56 225.7 151 74.2
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.7e-56 225.3 301 65.1
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.7e-56 225.3 834 74.3
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.9e-56 224.6 235 56.6
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 8.6e-56 223.0 276 61.6
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 8.6e-56 223.0 693 80.4
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 4.3e-55 220.7 811 72.5
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 5.6e-55 220.3 693 79.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.4e-53 215.7 139 75.5
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 3.0e-53 214.5 697 77.8
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 8.9e-53 213.0 149 71.1
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 8.9e-53 213.0 660 84.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.2e-52 212.6 149 71.1
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.2e-52 212.6 149 71.1
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.5e-52 212.2 249 48.2
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 2.6e-52 211.5 288 46.9
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.4e-52 210.7 250 51.2
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 5.7e-52 210.3 120 85.8
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.3e-51 209.1 149 69.8
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 1.3e-51 209.1 149 69.8
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.3e-51 209.1 152 65.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 2.2e-51 208.4 301 75.4
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 2.9e-51 208.0 265 51.3
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 8.3e-51 206.5 152 65.1
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 8.3e-51 206.5 802 74.4
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 1.1e-50 206.1 149 69.1
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.1e-50 204.1 635 82.2
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 9.2e-50 203.0 300 56.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.2e-49 202.6 136 70.6
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.7e-49 201.4 151 66.2
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 4.6e-49 200.7 252 50.0
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 5.0e-48 197.2 152 62.5
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.6e-48 196.4 105 91.4
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 8.6e-48 196.4 293 70.0
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 7.3e-47 193.4 126 71.4
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.2e-46 192.6 151 59.6
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.5e-44 185.7 140 65.7
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 2.0e-41 175.3 144 61.8
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 4.6e-41 174.1 141 62.4
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 2.8e-38 164.9 107 73.8
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 3.6e-38 164.5 112 67.9
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 4.0e-37 161.0 148 55.4
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 5.8e-36 157.1 109 71.6
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 5.8e-36 157.1 101 74.3
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 1.3e-35 156.0 284 61.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.7e-35 155.6 108 72.2
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 1.1e-34 152.9 108 67.6
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.0e-32 146.4 276 60.5
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.3e-32 145.2 305 59.3
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.0e-29 134.4 111 61.3
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.6e-28 131.7 111 60.4
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.4e-28 131.0 108 55.6
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.9e-26 125.6 84 72.6
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 4.1e-26 124.4 81 70.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 9.2e-26 123.2 82 73.2
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.6e-25 122.5 108 57.4
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 4.3e-23 114.4 118 52.5
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 9.0e-21 106.7 78 66.7
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.3e-19 102.8 87 59.8
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 9.3e-18 96.7 95 50.5
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 3.0e-16 91.7 48 95.8
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.5e-15 88.6 67 58.2
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 3.3e-15 88.2 61 68.9
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 4.0e-13 81.3 65 61.5
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-13 80.9 54 75.9
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.1e-10 73.2 100 43.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 7.9e-09 67.0 116 32.8
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.0e-08 66.6 116 31.9
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.3e-08 66.2 116 31.9
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.8e-08 65.9 39 71.8
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.3e-08 65.5 116 31.9
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 3.9e-08 64.7 116 32.8
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 5.1e-08 64.3 154 25.3
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 6.7e-08 63.9 118 28.8
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.1e-07 63.2 116 31.0
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 1.5e-07 62.8 116 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.9e-07 62.4 98 33.7
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.9e-07 62.4 104 33.7
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 2.5e-07 62.0 140 25.7
Mapoly0015s0193 Marchantia polymorpha HOM05D004079 ORTHO05D023551 2.5e-07 62.0 97 36.1
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 4.3e-07 61.2 116 31.0
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.3e-07 61.2 116 31.0
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 5.6e-07 60.8 116 30.2
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 7.4e-07 60.5 117 29.1
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 9.6e-07 60.1 126 31.7
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 1.3e-06 59.7 110 27.3
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 2.1e-06 58.9 101 34.7
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 3.7e-06 58.2 104 34.6
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 3.7e-06 58.2 110 27.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 3.7e-06 58.2 116 28.4
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 6.2e-06 57.4 97 36.1
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 6.2e-06 57.4 117 31.6
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 6.2e-06 57.4 151 27.2
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 8.1e-06 57.0 95 33.7


User provided reference genes

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