Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1233800 Malus domestica HOM05D007226 ORTHO05D009160 7.4e-65 250.4 125 100.0
MD05G1252700 Malus domestica HOM05D007226 ORTHO05D009160 1.7e-40 169.5 95 86.3
Prupe.4G111200 Prunus persica HOM05D007226 ORTHO05D009160 3.0e-34 148.7 96 80.2
FAN25G1348 Fragaria x ananassa HOM05D007226 ORTHO05D009160 2.5e-28 129.0 95 66.3
FAN21G0149 Fragaria x ananassa HOM05D007226 ORTHO05D009160 1.2e-27 126.7 95 66.3
FvH4_3g12220 Fragaria vesca HOM05D007226 ORTHO05D009160 8.0e-27 124.0 95 65.3
Haze_06036 Corylus avellana HOM05D007226 ORTHO05D009160 3.9e-21 105.1 101 57.4
Cfa000717 Carpinus fangiana HOM05D007226 ORTHO05D009160 1.1e-20 103.6 77 61.0
CiPaw.09G078000 Carya illinoinensis HOM05D007226 ORTHO05D009160 5.6e-20 101.3 98 53.1
Actinidia22392 Actinidia chinensis HOM05D007226 ORTHO05D009160 9.5e-20 100.5 74 63.5
Potri.015G121101 Populus trichocarpa HOM05D007226 ORTHO05D009160 2.1e-19 99.4 95 53.7
GSVIVG01012076001 Vitis vinifera HOM05D007226 ORTHO05D009160 2.8e-19 99.0 95 52.6
Dinv05963 Davidia involucrata HOM05D007226 ORTHO05D009160 6.8e-18 94.4 96 49.0
Lj4g0002757 Lotus japonicus HOM05D007226 ORTHO05D009160 1.5e-17 93.2 100 56.0
Sabra15G0137600 Salix brachista HOM05D007226 ORTHO05D009160 1.5e-17 93.2 97 51.5
Ciclev10017084m.g Citrus clementina HOM05D007226 ORTHO05D009160 2.6e-17 92.4 67 62.7
Rhsim02G0212700 Rhododendron simsii HOM05D007226 ORTHO05D009160 4.4e-17 91.7 68 64.7
Glyma.07G221900 Glycine max HOM05D007226 ORTHO05D009160 7.5e-17 90.9 65 64.6
Psat7g130920 Pisum sativum HOM05D007226 ORTHO05D009160 2.9e-16 89.0 90 50.0
MBI19_g38421_MAGBIO Magnolia biondii HOM05D007226 ORTHO05D009160 4.9e-16 88.2 67 61.2
Phvul.002G098700 Phaseolus vulgaris HOM05D007226 ORTHO05D009160 4.9e-16 88.2 98 51.0
Ca_18766_v3 Cicer arietinum L. HOM05D007226 ORTHO05D009160 6.4e-16 87.8 67 61.2
Medtr4g083990 Medicago truncatula HOM05D007226 ORTHO05D009160 1.4e-15 86.7 99 51.5
Thecc.06G141800 Theobroma cacao HOM05D007226 ORTHO05D009160 1.4e-15 86.7 97 51.5
QL11p017833 Quercus lobata HOM05D007226 ORTHO05D009160 2.4e-15 85.9 104 46.2
TWI38G0719 Tripterygium wilfordii HOM05D007226 ORTHO05D009160 3.2e-15 85.5 78 51.3
VMungo0251G0617 Vigna mungo HOM05D007226 ORTHO05D009160 3.2e-15 85.5 98 50.0
Nitab4.5_0001288g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 4.1e-15 85.1 74 59.5
CSS0023119 Camellia sinensis var. sinensis HOM05D007226 ORTHO05D009160 5.4e-15 84.7 72 61.1
Migut.M01975 Erythranthe guttata HOM05D007226 ORTHO05D009160 5.4e-15 84.7 102 49.0
Nn7g38162 Nelumbo nucifera HOM05D007226 ORTHO05D009160 5.4e-15 84.7 67 58.2
TAR371G1071 Trochodendron aralioides HOM05D007226 ORTHO05D009160 5.4e-15 84.7 98 52.0
ATR0763G163 Amborella trichopoda HOM05D007226 ORTHO05D009160 7.0e-15 84.3 92 47.8
Cpa.g.sc135.15 Carica papaya HOM05D007226 ORTHO05D009160 7.0e-15 84.3 69 55.1
Lalb_Chr05g0219731 Lupinus albus HOM05D007226 ORTHO05D009160 7.0e-15 84.3 95 50.5
Aa31LG9G8170 Aethionema arabicum HOM05D007226 ORTHO05D009160 1.2e-14 83.6 98 44.9
HanXRQChr14g0447221 Helianthus annuus HOM05D007226 ORTHO05D009160 1.6e-14 83.2 92 48.9
Manes.16G056825 Manihot esculenta HOM05D007226 ORTHO05D009160 2.1e-14 82.8 96 51.0
Cc09_g06180 Coffea canephora HOM05D007226 ORTHO05D009160 2.7e-14 82.4 98 45.9
ECA238G0615 Erigeron canadensis HOM05D007226 ORTHO05D009160 6.0e-14 81.3 96 50.0
RcHm_v2.0_Chr5g0020011 Rosa chinensis HOM05D007226 ORTHO05D009160 7.8e-14 80.9 47 76.6
COL.COLO4_30987 Corchorus olitorius HOM05D007226 ORTHO05D009160 1.0e-13 80.5 78 51.3
PGSC0003DMG400010353 Solanum tuberosum HOM05D007226 ORTHO05D009160 3.0e-13 79.0 73 53.4
Lsat_1_v5_gn_2_62900 Lactuca sativa HOM05D007226 ORTHO05D009160 3.9e-13 78.6 61 59.0
SalBow6G7060 Salvia bowleyana HOM05D007226 ORTHO05D009160 6.6e-13 77.8 63 63.5
SalBow8G0530 Salvia bowleyana HOM05D007226 ORTHO05D009160 6.6e-13 77.8 63 63.5
Sp2g09820 Schrenkiella parvula HOM05D007226 ORTHO05D009160 6.6e-13 77.8 100 41.0
vmacro03514 Vaccinium macrocarpon HOM05D007226 ORTHO05D009160 8.6e-13 77.4 126 40.5
Sopen02g018030 Solanum pennellii HOM05D007226 ORTHO05D009160 1.1e-12 77.0 73 53.4
SGA_v2.0_scaffold175G39365 Striga asiatica HOM05D007226 ORTHO05D009160 1.1e-12 77.0 76 50.0
BcaB07g30483 Brassica carinata HOM05D007226 ORTHO05D009160 1.5e-12 76.6 102 41.2
Thhalv10001050m.g Eutrema salsugineum HOM05D007226 ORTHO05D009160 1.5e-12 76.6 87 47.1
Nitab4.5_0003773g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 1.5e-12 76.6 59 61.0
Glyma.20G020600 Glycine max HOM05D007226 ORTHO05D009160 2.5e-12 75.9 67 59.7
Solyc02g068930.4 Solanum lycopersicum HOM05D007226 ORTHO05D009160 3.3e-12 75.5 73 53.4
CAN.G149.55 Capsicum annuum HOM05D007226 ORTHO05D009160 4.3e-12 75.1 72 54.2
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 4.3e-12 75.1 57 61.4
THA.LOC104812913 Tarenaya hassleriana HOM05D007226 ORTHO05D009160 5.6e-12 74.7 95 43.2
C02p45640 Brassica napus HOM05D007226 ORTHO05D009160 7.3e-12 74.3 102 39.2
C02p45740 Brassica napus HOM05D007226 ORTHO05D009160 7.3e-12 74.3 102 39.2
BolC2t10635H Brassica oleracea HOM05D007226 ORTHO05D009160 7.3e-12 74.3 102 39.2
BcaC03g16718 Brassica carinata HOM05D007226 ORTHO05D009160 9.5e-12 73.9 96 40.6
arahy.Tifrunner.gnm1.ann1.X3ZR55 Arachis hypogaea HOM05D007226 ORTHO05D009160 1.6e-11 73.2 94 45.7
CDE06G2689 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 1.6e-11 73.2 96 41.7
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.1e-11 72.8 62 58.1
A02p28790 Brassica napus HOM05D007226 ORTHO05D009160 2.8e-11 72.4 102 39.2
CARHR177680 Cardamine hirsuta HOM05D007226 ORTHO05D009160 2.8e-11 72.4 96 40.6
Eucgr.E01876 Eucalyptus grandis HOM05D007226 ORTHO05D009160 2.8e-11 72.4 65 52.3
CDE02G1897 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 3.6e-11 72.0 65 52.3
Aqoxy1G01459 Aquilegia oxysepala HOM05D007226 ORTHO05D009160 6.2e-11 71.2 71 45.1
ClCG01G025800 Citrullus lanatus HOM05D007226 ORTHO05D009160 6.2e-11 71.2 82 43.9
BraA02t07911Z Brassica rapa HOM05D007226 ORTHO05D009160 8.1e-11 70.9 102 38.2
CsaV3_6G053010 Cucumis sativus L. HOM05D007226 ORTHO05D009160 8.1e-11 70.9 97 39.2
AT5G45040 Arabidopsis thaliana HOM05D007226 ORTHO05D009160 1.1e-10 70.5 55 56.4
AL8G14380 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 2.3e-10 69.3 69 49.3
BolC2t10627H Brassica oleracea HOM05D007226 ORTHO05D009160 2.3e-10 69.3 88 39.8
Atru.chr10.515 Acer truncatum HOM05D007226 ORTHO05D009160 3.1e-10 68.9 103 44.7
Duzib192G0307 Durio zibethinus HOM05D007226 ORTHO05D009160 5.2e-10 68.2 62 53.2
Gohir.D06G145000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 5.2e-10 68.2 91 41.8
Gorai.010G168700 Gossypium raimondii HOM05D007226 ORTHO05D009160 5.2e-10 68.2 91 41.8
Carub.0008s0327 Capsella rubella HOM05D007226 ORTHO05D009160 6.8e-10 67.8 66 45.5
Gohir.A06G141000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 2.0e-09 66.2 86 43.0
AL8G14200 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 7.5e-09 64.3 67 47.8
DCAR_004326 Daucus carota HOM05D007226 ORTHO05D009160 6.4e-08 61.2 55 54.5
PSO675G1576 Papaver somniferum HOM05D007226 ORTHO05D009160 6.4e-08 61.2 53 58.5
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.4e-07 60.1 47 59.6
Peaxi162Scf00149g00723 Petunia axillaris HOM05D007226 ORTHO05D009160 1.9e-07 59.7 33 78.8
TPR.G20974 Trifolium pratense HOM05D007226 ORTHO05D009160 1.9e-07 59.7 39 66.7
PSO541G5038 Papaver somniferum HOM05D007226 ORTHO05D009160 7.1e-07 57.8 53 56.6
Sc15g0002750 Simmondsia chinensis HOM05D007226 ORTHO05D009160 7.1e-07 57.8 39 64.1


User provided reference genes

Program Settings