Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1212900 Malus domestica HOM05D001872 ORTHO05D246254 3.1e-148 528.5 272 100.0
MELO3C023826.2 Cucumis melo HOM05D001872 ORTHO05D001859 9.6e-09 65.1 41 78.0
CsaV3_5G006680 Cucumis sativus L. HOM05D001872 ORTHO05D001859 2.1e-08 63.9 41 75.6
Rhsim03G0128200 Rhododendron simsii HOM05D001872 ORTHO05D001859 1.8e-07 60.8 40 67.5
Aa31LG7G4190 Aethionema arabicum HOM05D001872 ORTHO05D001859 2.4e-07 60.5 40 72.5
MD07G1189500 Malus domestica HOM05D001872 ORTHO05D001859 2.4e-07 60.5 40 77.5
Sed0018854 Sechium edule HOM05D001872 ORTHO05D001859 2.4e-07 60.5 41 75.6
PSO339G4693 Papaver somniferum HOM05D001872 ORTHO05D001859 3.1e-07 60.1 40 67.5
FvH4_7g19940 Fragaria vesca HOM05D001872 ORTHO05D001859 4.0e-07 59.7 40 75.0
FAN06G4837 Fragaria x ananassa HOM05D001872 ORTHO05D001859 4.0e-07 59.7 40 75.0
Sed0025725 Sechium edule HOM05D001872 ORTHO05D001859 4.0e-07 59.7 41 70.7
BcaB05g24899 Brassica carinata HOM05D001872 ORTHO05D001859 5.3e-07 59.3 40 70.0
BcaB03g12910 Brassica carinata HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 70.0
A08p29770 Brassica napus HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 70.0
C08p19510 Brassica napus HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 70.0
BolC8t49574H Brassica oleracea HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 70.0
Thhalv10008761m.g Eutrema salsugineum HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 67.5
FAN03G1920 Fragaria x ananassa HOM05D001872 ORTHO05D001859 9.0e-07 58.5 40 72.5
AL1G32300 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
AT1G19570 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
A06p15730 Brassica napus HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
C05p18050 Brassica napus HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
BolC5t30513H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
BraA06t24683Z Brassica rapa HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
Nn2g12864 Nelumbo nucifera HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 67.5
Nitab4.5_0004055g0020 Nicotiana tabacum HOM05D001872 ORTHO05D001859 1.2e-06 58.2 40 70.0
BcaB07g31978 Brassica carinata HOM05D001872 ORTHO05D001859 1.5e-06 57.8 40 67.5
Ciclev10032931m.g Citrus clementina HOM05D001872 ORTHO05D001859 1.5e-06 57.8 45 62.2
FAN10G4013 Fragaria x ananassa HOM05D001872 ORTHO05D001859 1.5e-06 57.8 40 72.5
PSO384G1978 Papaver somniferum HOM05D001872 ORTHO05D001859 1.5e-06 57.8 40 65.0
QL08p057874 Quercus lobata HOM05D001872 ORTHO05D001859 1.5e-06 57.8 40 70.0
Sp1g17420 Schrenkiella parvula HOM05D001872 ORTHO05D001859 1.5e-06 57.8 40 70.0
BcaB03g14439 Brassica carinata HOM05D001872 ORTHO05D001859 2.0e-06 57.4 40 70.0
CSS0046087 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 2.0e-06 57.4 36 72.2
CANSAT64G0877 Cannabis sativa HOM05D001872 ORTHO05D001859 2.0e-06 57.4 41 68.3
CiPaw.01G281700 Carya illinoinensis HOM05D001872 ORTHO05D001859 2.0e-06 57.4 36 75.0
DCAR_027680 Daucus carota HOM05D001872 ORTHO05D001859 2.0e-06 57.4 40 70.0
Glyma.20G240300 Glycine max HOM05D001872 ORTHO05D001859 2.0e-06 57.4 40 70.0
THA.LOC104827305 Tarenaya hassleriana HOM05D001872 ORTHO05D001859 2.0e-06 57.4 40 67.5
BcaC03g15558 Brassica carinata HOM05D001872 ORTHO05D001859 2.6e-06 57.0 36 72.2
C02p32460 Brassica napus HOM05D001872 ORTHO05D001859 2.6e-06 57.0 36 72.2
CANSAT25G2271 Cannabis sativa HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 70.0
Dinv31405 Davidia involucrata HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 72.5
Glyma.10G291100 Glycine max HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 70.0
Lj1A931T51 Lonicera japonica HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 65.0
MD01G1120300 Malus domestica HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 72.5
Phvul.007G009800 Phaseolus vulgaris HOM05D001872 ORTHO05D001859 2.6e-06 57.0 40 70.0
Sed0015050 Sechium edule HOM05D001872 ORTHO05D001859 2.6e-06 57.0 41 68.3
Ah.16g107630 Amaranthus hybridus HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 67.5
CARHR020120 Cardamine hirsuta HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 65.0
Haze_16990 Corylus avellana HOM05D001872 ORTHO05D001859 3.4e-06 56.6 51 58.8
Manes.10G037200 Manihot esculenta HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 70.0
Peaxi162Scf00015g02219 Petunia axillaris HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 70.0
PGR142G2200 Punica granatum HOM05D001872 ORTHO05D001859 3.4e-06 56.6 36 72.2
RcHm_v2.0_Chr1g0365431 Rosa chinensis HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 70.0
Thecc.10G058100 Theobroma cacao HOM05D001872 ORTHO05D001859 3.4e-06 56.6 40 67.5
AL2G35200 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 4.5e-06 56.2 38 71.1
AT1G75270 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 4.5e-06 56.2 38 71.1
Oeu011131.4 Olea europaea HOM05D001872 ORTHO05D001859 4.5e-06 56.2 40 70.0
Sabra10G0163600 Salix brachista HOM05D001872 ORTHO05D001859 4.5e-06 56.2 40 67.5
Sp5g30440 Schrenkiella parvula HOM05D001872 ORTHO05D001859 4.5e-06 56.2 38 71.1
TAR636G1680 Trochodendron aralioides HOM05D001872 ORTHO05D001859 4.5e-06 56.2 40 67.5
Cfa001543 Carpinus fangiana HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 72.5
Gohir.D10G219500 Gossypium hirsutum HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 70.0
Gorai.011G246200 Gossypium raimondii HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 70.0
Solyc05g054760.4 Solanum lycopersicum HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 70.0
Sopen05g033230 Solanum pennellii HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 70.0
PGSC0003DMG400023416 Solanum tuberosum HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 70.0
TWI38G2404 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 5.8e-06 55.8 40 67.5
Atru.chr12.566 Acer truncatum HOM05D001872 ORTHO05D001859 7.6e-06 55.5 40 70.0
CANSAT35G1444 Cannabis sativa HOM05D001872 ORTHO05D001859 7.6e-06 55.5 29 86.2
Nn2g10511 Nelumbo nucifera HOM05D001872 ORTHO05D001859 7.6e-06 55.5 40 62.5
Prupe.2G227100 Prunus persica HOM05D001872 ORTHO05D001859 7.6e-06 55.5 40 67.5
TWI15G1031 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 7.6e-06 55.5 40 62.5
Aa31LG4G5510 Aethionema arabicum HOM05D001872 ORTHO05D001859 1.0e-05 55.1 36 69.4
Aqoxy4G03053 Aquilegia oxysepala HOM05D001872 ORTHO05D001859 1.0e-05 55.1 40 65.0
ClCG02G013470 Citrullus lanatus HOM05D001872 ORTHO05D001859 1.0e-05 55.1 45 62.2
Gohir.A05G351200 Gossypium hirsutum HOM05D001872 ORTHO05D001859 1.0e-05 55.1 40 65.0
Lj5g0001191 Lotus japonicus HOM05D001872 ORTHO05D001859 1.0e-05 55.1 40 65.0
Medtr1g115500 Medicago truncatula HOM05D001872 ORTHO05D001859 1.0e-05 55.1 40 65.0
vmacro07140 Vaccinium macrocarpon HOM05D001872 ORTHO05D001859 1.0e-05 55.1 40 65.0
GSVIVG01005966001 Vitis vinifera HOM05D001872 ORTHO05D001859 1.0e-05 55.1 28 85.7


User provided reference genes

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