Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.0e-145 520.0 261 100.0
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.7e-143 511.5 261 98.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.2e-142 508.4 261 96.9
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.1e-137 491.9 261 93.1
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.1e-137 491.9 261 93.1
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 92.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 92.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 92.7
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 5.8e-136 487.6 260 92.3
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 91.2
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.0
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 91.2
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 90.4
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.9e-134 482.6 260 90.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.0
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.4
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.4
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 90.8
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.4
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.4
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 89.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 90.4
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 89.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 89.7
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 7.8e-133 477.2 260 90.0
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.0
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 89.7
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 88.9
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.3
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.7
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.9e-132 474.9 260 89.2
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 88.9
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 89.3
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.3
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.5
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.5e-131 473.0 265 88.3
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 88.9
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 88.5
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.5
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.5
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.3e-131 471.9 260 88.8
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.3e-131 470.7 277 86.3
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.5
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.5
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.6e-130 469.5 260 88.5
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.1e-130 469.2 258 89.5
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.9
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.4
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 87.4
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 88.1
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.0
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.3e-129 465.7 256 89.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 4.0e-129 464.9 259 88.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.0
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 86.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 8.9e-129 463.8 269 85.5
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.0
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 86.2
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 86.6
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 86.6
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 86.2
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 86.6
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.4e-128 461.8 285 81.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 87.0
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 86.6
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.2e-127 459.1 264 86.7
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 86.2
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 85.1
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 86.6
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 85.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.2
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 84.7
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 85.4
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 85.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 85.1
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 85.1
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.1
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 84.7
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 84.7
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 6.0e-125 451.1 260 85.0
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 6.0e-125 451.1 260 85.0
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 83.1
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.0e-124 448.7 241 91.7
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 3.9e-124 448.4 260 84.2
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 84.7
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 5.1e-124 448.0 259 84.9
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 5.1e-124 448.0 259 84.9
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 8.6e-124 447.2 260 85.4
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.6e-124 447.2 241 91.3
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.3e-123 444.9 240 91.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 83.9
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 81.6
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 82.4
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 3.1e-121 438.7 261 83.5
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 81.6
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 3.4e-120 435.3 256 83.6
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.3e-119 433.3 261 82.0
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 2.2e-119 432.6 261 82.4
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 4.2e-118 428.3 261 81.6
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.5e-115 419.9 276 77.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.0e-112 409.5 261 80.5
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.4e-112 408.7 261 75.9
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.8e-112 407.9 261 76.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 73.9
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 9.9e-112 407.1 261 77.4
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 9.9e-112 407.1 261 77.4
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.3e-111 406.8 261 79.7
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-111 406.4 337 65.3
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.6e-109 398.3 263 75.7
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.7e-108 396.4 213 89.7
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.9e-107 392.9 261 77.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.6e-106 389.8 222 86.5
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.1e-105 385.6 309 68.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 7.6e-104 380.9 201 91.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 3.8e-103 378.6 254 75.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 7.1e-102 374.4 240 77.5
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.3e-97 358.2 200 87.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 5.3e-97 358.2 195 86.7
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.9e-95 352.4 257 75.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-88 329.7 260 61.5
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-88 329.7 177 89.3
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.8e-81 306.6 161 90.7
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 4.2e-70 268.9 229 59.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.3e-66 257.3 243 58.8
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.4e-57 226.5 143 79.0
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.4e-57 226.5 135 84.4
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 9.1e-57 224.6 113 94.7
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 3.5e-56 222.6 142 78.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 3.8e-47 192.6 98 92.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 2.1e-45 186.8 271 47.2
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.4e-41 173.3 140 64.3
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 3.1e-41 172.9 196 51.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 7.7e-40 168.3 108 79.6
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 3.6e-37 159.5 135 63.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.0e-36 156.4 92 83.7
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.2e-34 150.2 195 47.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 8.3e-34 148.3 100 76.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 7.3e-30 135.2 81 80.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 3.4e-27 126.3 92 67.4
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.3e-23 113.6 111 57.7
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 6.8e-20 102.1 64 79.7
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 5.1e-15 85.9 81 56.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.7e-10 70.9 59 61.0
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 8.4e-10 68.6 56 66.1
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 2.1e-08 63.9 62 59.7
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 4.6e-08 62.8 44 75.0
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 4.6e-08 62.8 52 65.4
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 3.9e-07 59.7 37 73.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 4.3e-06 56.2 38 63.2
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 9.6e-06 55.1 34 70.6


User provided reference genes

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