Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.3e-267 922.9 454 100.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.1e-250 868.6 456 93.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 4.7e-242 840.9 457 90.4
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.2e-236 822.0 457 88.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 3.2e-235 818.1 457 88.4
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-233 812.0 449 88.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.8e-233 810.4 449 87.5
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.8e-233 810.1 449 88.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.5e-221 771.5 457 81.8
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.1e-218 762.3 454 80.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.0e-216 755.7 459 79.5
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.4e-216 754.6 457 79.9
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.8e-216 753.4 453 80.6
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 9.8e-216 753.4 449 80.8
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.9e-215 751.9 454 80.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 3.7e-215 751.5 455 79.3
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.9e-215 751.1 450 80.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 4.1e-214 748.0 458 80.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 4.1e-214 748.0 454 80.6
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.4e-214 747.7 454 79.5
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.4e-214 747.7 454 79.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.7e-213 745.3 457 79.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.6e-213 744.6 459 79.5
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.3e-212 742.3 453 78.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 3.0e-212 741.9 450 78.9
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 3.9e-212 741.5 449 80.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-210 736.1 454 78.4
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.1e-210 735.7 453 78.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.8e-210 735.3 457 77.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 4.7e-210 734.6 453 77.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.4e-209 733.0 454 78.4
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.3e-209 732.3 446 79.8
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.3e-209 732.3 453 78.4
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 5.2e-209 731.1 449 78.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.8e-209 730.7 449 79.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 8.9e-209 730.3 457 76.4
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.0e-208 729.2 452 77.2
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.4e-208 728.4 453 77.5
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.9e-207 725.3 457 77.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 8.3e-207 723.8 454 76.4
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.4e-206 723.0 453 76.4
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.9e-206 722.6 451 77.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.2e-206 721.8 455 76.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.4e-206 721.1 449 80.8
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.0e-205 719.2 451 76.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.7e-205 718.8 445 77.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.0e-204 715.3 434 80.2
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.5e-203 712.2 439 78.6
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 7.3e-203 710.7 452 76.1
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.2e-202 709.9 434 78.8
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.2e-202 709.9 447 76.3
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.2e-202 707.6 454 74.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.4e-201 706.4 449 76.4
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.4e-201 706.4 457 75.1
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.3e-201 705.7 454 75.6
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.1e-201 705.3 457 75.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 8.9e-201 703.7 451 75.4
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 8.9e-201 703.7 457 74.8
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.2e-200 703.4 449 73.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.6e-200 702.2 451 74.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.4e-200 701.8 437 76.9
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.4e-200 701.8 451 74.9
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 2.9e-199 698.7 457 74.8
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.3e-196 689.1 407 81.1
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 8.6e-196 687.2 454 72.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 5.6e-195 684.5 453 74.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.1e-194 682.6 452 73.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 4.7e-194 681.4 447 75.2
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 6.2e-194 681.0 457 74.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.1e-193 680.2 456 73.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.1e-193 678.7 459 73.4
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.0e-192 676.0 454 73.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.4e-192 674.9 451 73.2
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 9.9e-192 673.7 458 72.7
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.2e-190 668.7 414 77.1
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.0e-188 663.7 457 72.6
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.0e-188 662.1 445 71.7
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.2e-186 656.8 453 71.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 2.8e-186 655.6 450 73.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.6e-186 655.2 452 71.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.6e-186 655.2 454 71.4
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-185 653.7 449 71.7
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 3.1e-185 652.1 452 71.7
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 5.2e-185 651.4 454 71.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 5.2e-185 651.4 454 71.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 6.9e-185 651.0 407 76.7
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.6e-184 649.0 454 70.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 9.9e-184 647.1 452 71.7
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.3e-183 646.7 453 70.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 6.4e-183 644.4 454 70.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.2e-182 641.7 452 71.0
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 7.1e-182 641.0 444 71.2
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.6e-181 639.8 415 74.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 4.6e-181 638.3 449 71.5
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-181 637.9 452 70.6
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 6.0e-181 637.9 452 70.6
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.7e-180 636.3 452 70.8
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.0e-180 635.6 458 70.5
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 6.6e-180 634.4 350 88.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-178 630.2 451 70.5
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.3e-178 630.2 506 64.8
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.1e-177 625.5 497 61.8
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.2e-176 623.6 482 64.3
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.0e-176 622.9 448 67.9
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.4e-175 617.5 448 66.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 8.4e-175 617.5 368 80.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.0e-173 611.3 455 66.2
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.9e-163 579.7 388 72.9
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.4e-161 572.8 452 66.6
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.8e-159 565.5 360 75.8
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.1e-158 563.9 448 65.4
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.5e-155 552.7 463 60.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.1e-153 545.8 494 57.3
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.8e-151 538.9 478 59.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.3e-147 525.4 446 62.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.4e-144 515.8 446 60.8
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-141 506.5 449 60.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.2e-130 469.9 445 54.2
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.8e-122 443.0 522 46.2
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.0e-121 438.3 451 53.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.5e-115 420.6 326 68.1
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 5.9e-112 408.7 305 65.2
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 3.6e-109 399.4 250 75.6
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-108 397.5 230 83.0
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.7e-93 345.9 286 66.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.2e-85 321.2 457 43.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.2e-85 318.9 203 72.9
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.1e-84 318.2 377 45.6
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 3.8e-74 283.1 471 36.9
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.1e-73 281.6 251 59.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.0e-72 275.8 266 51.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-70 271.6 248 59.3
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.1e-62 245.0 491 35.4
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 4.8e-61 239.6 435 38.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.4e-60 238.0 452 36.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.0e-60 235.3 174 69.0
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.2e-56 224.9 178 64.0
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.9e-55 219.9 206 54.9
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.5e-54 217.2 285 45.3
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.1e-52 211.8 195 55.4
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-52 211.1 111 87.4
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-51 207.6 111 85.6
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.6e-51 205.7 111 84.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 4.3e-46 189.9 205 52.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.9e-42 176.4 111 75.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 9.3e-41 172.2 124 66.9
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.3e-38 163.7 107 72.9
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.8e-37 160.6 336 33.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.2e-33 147.1 119 61.3
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 4.2e-33 146.7 92 70.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.6e-32 143.7 116 62.1
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 8.2e-29 132.5 88 70.5
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-28 132.1 67 94.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 7.9e-24 115.9 125 54.4
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 8.5e-18 95.9 58 79.3
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 7.0e-12 76.3 46 73.9
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 5.0e-10 70.1 43 79.1
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 4.0e-07 60.5 56 55.4
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 5.7e-06 56.6 46 52.2


User provided reference genes

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