Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 7.4e-104 380.6 194 100.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 8.2e-95 350.5 194 92.8
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 9.1e-86 320.5 192 87.0
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.4e-70 269.2 192 68.8
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 2.7e-69 265.8 188 70.7
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 3.5e-69 265.4 193 69.4
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.3e-68 263.5 198 71.7
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 4.2e-67 258.5 188 68.6
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 9.4e-67 257.3 188 68.1
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.6e-66 256.5 188 68.6
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 2.1e-66 256.1 192 66.7
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 2.7e-66 255.8 192 66.7
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 4.7e-66 255.0 192 66.1
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 6.1e-66 254.6 188 67.6
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 8.0e-66 254.2 192 67.2
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 2.3e-65 252.7 185 68.6
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 2.3e-65 252.7 187 70.1
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.5e-64 250.0 189 67.7
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 4.4e-64 248.4 190 65.8
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 9.8e-64 247.3 188 67.0
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 2.2e-63 246.1 195 64.1
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 6.3e-63 244.6 181 70.7
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 8.3e-63 244.2 193 64.8
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 8.3e-63 244.2 183 65.0
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 8.3e-63 244.2 192 63.0
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 1.4e-62 243.4 192 66.7
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.4e-62 243.4 192 65.6
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 2.4e-62 242.7 192 64.1
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 2.4e-62 242.7 188 64.9
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 3.1e-62 242.3 186 66.1
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 3.1e-62 242.3 189 68.3
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 4.1e-62 241.9 180 65.6
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 7.0e-62 241.1 186 65.6
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 9.1e-62 240.7 171 69.0
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 9.1e-62 240.7 192 64.1
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.2e-61 240.4 183 63.9
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 2.7e-61 239.2 189 63.0
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 4.5e-61 238.4 181 66.3
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 5.9e-61 238.0 181 66.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 5.9e-61 238.0 189 65.1
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 1.0e-60 237.3 189 63.5
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.0e-60 237.3 192 59.9
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.7e-60 236.5 184 65.8
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 2.9e-60 235.7 204 61.3
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 2.9e-60 235.7 192 61.5
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 6.5e-60 234.6 192 63.5
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 8.5e-60 234.2 163 69.9
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 8.5e-60 234.2 163 69.9
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 8.5e-60 234.2 166 66.9
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 1.5e-59 233.4 184 64.7
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 4.2e-59 231.9 192 64.6
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 7.2e-59 231.1 194 61.9
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.6e-58 229.9 183 63.4
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.1e-58 229.6 190 61.1
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 2.7e-58 229.2 189 61.9
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 3.6e-58 228.8 185 61.6
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 6.1e-58 228.0 163 66.9
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 6.1e-58 228.0 190 60.5
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.0e-57 227.3 162 67.3
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.4e-57 226.9 178 65.7
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 2.3e-57 226.1 166 66.9
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 4.0e-57 225.3 189 60.8
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 6.8e-57 224.6 185 62.7
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 8.8e-57 224.2 144 73.6
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.2e-56 223.8 150 70.0
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.2e-56 223.8 186 61.8
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 2.6e-56 222.6 178 64.0
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 2.6e-56 222.6 178 64.0
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 2.6e-56 222.6 178 64.0
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 5.7e-56 221.5 191 58.1
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 1.3e-55 220.3 195 57.4
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 2.2e-55 219.5 178 63.5
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.2e-55 219.5 179 64.2
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 2.8e-55 219.2 192 59.4
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 6.3e-55 218.0 296 44.6
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 1.4e-54 216.9 181 61.3
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 3.1e-54 215.7 175 61.7
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 4.1e-54 215.3 204 59.3
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 2.0e-53 213.0 176 63.6
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.0e-53 213.0 189 59.8
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 2.0e-53 213.0 178 61.8
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.0e-53 213.0 166 64.5
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 2.7e-53 212.6 158 65.8
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 7.7e-53 211.1 170 63.5
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.7e-52 209.9 178 61.8
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.7e-52 209.9 175 62.3
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 2.3e-52 209.5 176 62.5
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 6.6e-52 208.0 161 62.7
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.5e-51 206.1 176 56.2
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 4.3e-51 205.3 175 57.7
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 8.0e-50 201.1 193 54.9
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 1.1e-46 190.7 176 55.7
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 7.0e-46 188.0 198 51.0
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 3.0e-44 182.6 198 48.0
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.3e-43 177.9 193 51.3
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.6e-42 176.8 130 71.5
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 8.9e-41 171.0 130 71.5
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 4.4e-40 168.7 196 44.4
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.2e-38 162.5 114 71.1
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 4.6e-37 158.7 114 72.8
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 3.3e-35 152.5 138 51.4
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 7.3e-35 151.4 123 52.8
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 6.2e-34 148.3 149 48.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 3.1e-33 146.0 135 52.6
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.4e-30 137.1 92 67.4
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 9.2e-30 134.4 122 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 5.2e-25 118.6 139 46.0
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.2e-24 117.5 77 68.8
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 4.1e-22 109.0 97 51.5
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 7.3e-19 98.2 131 40.5
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 8.1e-18 94.7 143 42.7
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 7.1e-14 81.6 82 47.6
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 3.5e-13 79.3 133 33.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 4.8e-10 68.9 67 59.7
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 6.9e-09 65.1 115 30.4
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 1.2e-08 64.3 154 28.6


User provided reference genes

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