Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 3.1e-309 1064.3 549 100.0
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.1e-282 976.1 549 92.2
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.5e-276 954.5 549 89.3
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.4e-256 888.6 553 84.1
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 4.9e-254 880.9 553 83.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.9e-253 879.0 553 82.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.9e-253 879.0 553 82.3
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.6e-249 865.9 554 80.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.3e-235 819.7 552 77.9
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.1e-232 808.5 552 76.8
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 4.1e-232 808.1 557 77.4
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.6e-231 805.4 559 76.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 5.5e-229 797.7 553 77.2
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.7e-228 795.4 565 75.6
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.0e-227 793.5 552 74.5
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-227 792.7 552 74.5
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.3e-227 792.3 553 76.3
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.3e-227 792.3 550 75.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.9e-227 791.6 553 75.9
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.7e-225 785.0 552 74.1
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 4.8e-225 784.6 553 77.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 5.3e-224 781.2 553 75.6
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 3.8e-222 775.0 553 75.8
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.0e-222 774.6 557 73.4
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 3.2e-221 771.9 553 74.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 7.9e-220 767.3 552 75.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.9e-219 765.0 558 74.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.4e-213 746.5 551 72.4
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.7e-209 733.0 541 73.2
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.8e-209 731.5 552 71.0
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.1e-208 730.3 558 72.4
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 3.1e-208 728.8 557 71.5
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.1e-208 727.2 559 71.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.5e-206 720.7 559 72.1
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.2e-205 718.8 634 64.8
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.1e-204 716.1 556 69.2
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.0e-203 713.8 557 69.5
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.3e-203 712.6 557 69.1
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.0e-203 712.2 518 73.4
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 3.0e-203 712.2 556 69.2
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 6.7e-203 711.1 562 69.8
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.7e-203 711.1 553 68.2
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 3.3e-202 708.8 555 71.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 7.5e-202 707.6 554 70.0
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.7e-201 706.4 559 69.8
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 8.2e-201 704.1 555 69.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 2.4e-200 702.6 554 71.5
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.1e-200 701.8 542 68.3
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.1e-200 701.8 554 67.7
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 4.1e-200 701.8 606 63.9
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 9.1e-200 700.7 554 70.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.5e-199 698.4 559 68.3
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 6.5e-198 694.5 554 69.3
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.2e-197 692.2 557 68.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 7.2e-197 691.0 546 70.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 6.1e-196 688.0 561 67.6
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 3.0e-195 685.6 552 66.5
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 7.5e-194 681.0 573 64.9
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.7e-193 679.9 555 66.3
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.8e-192 676.4 554 66.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.5e-191 672.2 554 66.1
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.0e-190 670.6 575 63.7
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 6.6e-190 667.9 560 65.4
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.5e-189 666.8 555 65.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.3e-189 665.6 554 65.3
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 5.5e-189 664.8 569 65.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.8e-188 662.5 575 63.0
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 8.0e-188 661.0 559 65.7
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.4e-187 660.2 560 65.2
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.0e-187 659.1 585 62.6
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 3.0e-187 659.1 554 64.8
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 3.0e-187 659.1 553 67.1
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.7e-185 653.3 612 62.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.2e-185 652.9 467 74.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.3e-181 638.6 693 54.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 2.1e-180 636.3 553 64.2
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.8e-180 636.0 563 64.3
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 5.2e-179 631.7 692 54.3
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 8.3e-177 624.4 562 63.3
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 2.7e-175 619.4 557 63.2
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 6.6e-174 614.8 578 59.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.3e-173 611.3 527 64.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.6e-172 610.1 449 73.1
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 6.2e-172 608.2 570 63.0
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 4.4e-170 602.1 638 56.6
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 5.8e-170 601.7 577 62.9
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.8e-170 601.7 578 63.7
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 9.8e-170 600.9 572 62.4
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.7e-169 600.1 571 62.3
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 6.4e-169 598.2 468 66.5
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 7.0e-168 594.7 570 61.6
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 7.0e-168 594.7 572 62.6
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.2e-167 594.0 566 61.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 2.1e-167 593.2 573 62.1
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.4e-160 570.5 563 60.6
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 5.8e-154 548.5 576 60.2
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 5.8e-154 548.5 563 60.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.3e-153 547.4 571 60.6
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.3e-153 547.4 571 60.6
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 9.2e-152 541.2 556 56.8
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.7e-150 537.0 575 58.3
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 8.7e-150 534.6 575 58.1
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.3e-149 532.7 560 57.5
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 9.6e-149 531.2 560 56.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.2e-145 520.0 432 68.1
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.9e-145 519.6 521 58.2
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 7.6e-138 495.0 566 53.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.2e-135 487.6 582 51.2
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 3.3e-133 479.6 413 65.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 9.6e-133 478.0 571 50.1
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.8e-124 449.9 561 51.2
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 4.8e-124 449.1 557 50.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.5e-122 444.1 555 50.1
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.5e-122 444.1 389 63.2
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.3e-97 361.3 560 45.2
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 5.7e-93 345.9 309 61.8
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.1e-91 339.7 555 42.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 5.9e-90 335.9 382 51.6
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.3e-76 291.6 361 48.5
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.8e-75 287.7 502 40.0
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.9e-51 208.0 466 38.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.6e-49 199.1 264 42.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 8.7e-33 146.0 209 49.8
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.0e-30 136.0 112 67.9
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.7e-28 131.7 86 77.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.9e-27 128.3 91 74.7
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 1.1e-22 112.5 84 69.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.5e-18 97.4 206 29.6
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.9e-16 91.7 74 64.9
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 3.3e-16 90.9 239 32.2
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.1e-15 88.2 237 30.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.1e-14 84.3 191 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.4e-13 80.9 229 28.8
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.1e-10 71.6 62 62.9
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.3e-06 57.0 74 50.0


User provided reference genes

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