Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 1.3e-114 416.4 209 100.0
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 9.4e-97 357.1 209 86.6
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 6.5e-90 334.3 209 82.3
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 2.5e-89 332.4 209 79.4
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 2.4e-84 315.8 210 79.0
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 2.3e-82 309.3 217 76.5
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 8.6e-74 280.8 214 68.7
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 1.5e-73 280.0 210 69.5
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 7.3e-73 277.7 212 69.8
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 5.2e-71 271.6 225 66.2
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 8.9e-71 270.8 210 67.1
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.5e-70 270.0 215 66.5
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 2.0e-70 269.6 215 70.2
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 3.4e-70 268.9 210 66.7
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 2.2e-69 266.2 210 66.7
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 6.4e-69 264.6 222 65.3
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 1.4e-68 263.5 210 66.7
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 3.2e-68 262.3 199 71.4
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 4.1e-68 261.9 210 64.3
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 5.4e-68 261.5 197 68.0
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 6.0e-67 258.1 189 68.8
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 6.0e-67 258.1 189 68.8
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 7.8e-67 257.7 194 69.1
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 1.0e-66 257.3 209 67.9
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.0e-66 257.3 206 65.0
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 1.3e-66 256.9 189 68.8
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.7e-66 256.5 236 64.0
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 1.7e-66 256.5 191 69.6
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 3.9e-66 255.4 197 67.5
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 5.0e-66 255.0 211 64.5
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 5.0e-66 255.0 200 70.0
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 8.6e-66 254.2 218 61.9
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 4.3e-65 251.9 235 63.4
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 5.6e-65 251.5 205 64.4
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 7.3e-65 251.1 187 66.8
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 7.3e-65 251.1 207 66.2
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 9.5e-65 250.8 189 66.7
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 1.2e-64 250.4 189 67.2
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 1.6e-64 250.0 189 67.2
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 2.1e-64 249.6 202 64.4
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 3.6e-64 248.8 202 64.4
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 3.6e-64 248.8 196 67.9
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 4.7e-64 248.4 191 68.6
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 6.2e-64 248.1 189 65.6
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 6.2e-64 248.1 202 63.9
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 6.2e-64 248.1 194 65.5
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 3.1e-63 245.7 189 65.6
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 6.8e-63 244.6 207 61.4
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 8.9e-63 244.2 206 64.1
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 1.5e-62 243.4 232 56.0
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 2.0e-62 243.0 189 66.7
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 4.4e-62 241.9 204 64.7
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 5.8e-62 241.5 203 60.1
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 7.5e-62 241.1 192 64.1
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 9.8e-62 240.7 207 60.9
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.3e-61 240.4 198 66.2
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.3e-61 240.4 206 62.6
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 2.2e-61 239.6 204 59.3
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 4.9e-61 238.4 207 62.3
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 8.3e-61 237.7 198 65.2
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 1.1e-60 237.3 204 60.3
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 5.4e-60 235.0 198 60.6
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 5.4e-60 235.0 209 63.2
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 9.2e-60 234.2 206 61.2
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 9.2e-60 234.2 209 58.4
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 1.6e-59 233.4 198 61.6
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 4.6e-59 231.9 199 59.8
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 4.6e-59 231.9 215 60.0
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 7.8e-59 231.1 199 61.3
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 1.0e-58 230.7 198 58.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 3.0e-58 229.2 199 60.8
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 3.9e-58 228.8 205 57.6
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 2.5e-57 226.1 195 61.5
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 1.8e-55 219.9 144 75.7
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 5.2e-55 218.4 193 57.0
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 4.4e-54 215.3 194 58.8
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 9.9e-54 214.2 150 70.7
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 1.4e-52 210.3 198 57.6
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 4.1e-52 208.8 245 50.6
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 7.1e-52 208.0 168 62.5
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.2e-51 207.2 201 59.2
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 3.5e-51 205.7 174 61.5
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.0e-50 204.1 184 61.4
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 4.3e-49 198.7 168 63.7
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 5.6e-49 198.4 198 50.5
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 4.0e-47 192.2 129 70.5
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 3.4e-46 189.1 147 66.0
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 1.7e-45 186.8 208 52.4
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 7.1e-44 181.4 142 62.0
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.2e-43 180.6 148 64.9
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 1.9e-41 173.3 116 66.4
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 4.3e-41 172.2 139 55.4
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 3.6e-40 169.1 122 73.0
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 8.1e-40 167.9 142 57.7
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 8.1e-40 167.9 274 39.8
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 1.1e-39 167.5 144 56.2
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 2.9e-37 159.5 128 61.7
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 4.9e-37 158.7 124 68.5
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 9.3e-36 154.5 100 80.0
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 2.3e-34 149.8 287 35.9
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 2.2e-29 133.3 162 46.3
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 6.4e-29 131.7 112 66.1
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 7.9e-27 124.8 107 57.9
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 3.7e-24 115.9 207 38.2
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 8.4e-21 104.8 68 73.5
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 1.1e-20 104.4 84 64.3
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 3.2e-20 102.8 88 58.0
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 2.7e-19 99.8 77 67.5
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 5.1e-18 95.5 102 42.2
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 3.1e-15 86.3 115 44.3
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.6e-11 73.9 64 57.8
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 1.1e-07 61.2 142 27.5
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 1.8e-07 60.5 124 27.4
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 4.1e-07 59.3 112 31.2
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 4.1e-07 59.3 131 34.4
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 5.3e-07 58.9 125 28.0
Glyma.19G123100 Glycine max HOM05D002397 ORTHO05D002667 5.3e-07 58.9 109 32.1
TPR.G38253 Trifolium pratense HOM05D002397 ORTHO05D002667 6.9e-07 58.5 127 27.6
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 9.0e-07 58.2 104 30.8
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 1.2e-06 57.8 160 27.5
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 1.5e-06 57.4 129 26.4
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 1.5e-06 57.4 146 26.7
Gohir.A12G046800 Gossypium hirsutum HOM05D002397 ORTHO05D002667 2.0e-06 57.0 112 29.5
Gohir.D12G045800 Gossypium hirsutum HOM05D002397 ORTHO05D002667 2.0e-06 57.0 112 29.5
Gorai.008G048400 Gossypium raimondii HOM05D002397 ORTHO05D002667 2.0e-06 57.0 112 29.5
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 2.6e-06 56.6 135 28.9
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 2.6e-06 56.6 115 27.8
QL11p016263 Quercus lobata HOM05D002397 ORTHO05D002667 2.6e-06 56.6 159 25.8
Ca_18753_v3 Cicer arietinum L. HOM05D002397 ORTHO05D002667 3.4e-06 56.2 127 27.6
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 3.4e-06 56.2 104 29.8
TAR629G2980 Trochodendron aralioides HOM05D002397 ORTHO05D002667 3.4e-06 56.2 129 26.4
ATR0307G077 Amborella trichopoda HOM05D002397 ORTHO05D002667 4.5e-06 55.8 101 31.7
HanXRQChr14g0447211 Helianthus annuus HOM05D002397 ORTHO05D002667 4.5e-06 55.8 121 27.3
Nn7g38244 Nelumbo nucifera HOM05D002397 ORTHO05D002667 4.5e-06 55.8 139 28.8
Hund19045 Selenicereus undatus HOM05D002397 ORTHO05D002667 4.5e-06 55.8 155 25.8
Gohir.A13G001100 Gossypium hirsutum HOM05D002397 ORTHO05D002667 5.9e-06 55.5 109 29.4
Gorai.013G000500 Gossypium raimondii HOM05D002397 ORTHO05D002667 5.9e-06 55.5 109 30.3
Atru.chr8.926 Acer truncatum HOM05D002397 ORTHO05D002667 7.7e-06 55.1 109 29.4
Eucgr.K01707 Eucalyptus grandis HOM05D002397 ORTHO05D002667 7.7e-06 55.1 154 24.7
HanXRQChr17g0539621 Helianthus annuus HOM05D002397 ORTHO05D002667 7.7e-06 55.1 156 26.3
Solyc02g068700.3 Solanum lycopersicum HOM05D002397 ORTHO05D002667 7.7e-06 55.1 117 29.1
Sopen02g017870 Solanum pennellii HOM05D002397 ORTHO05D002667 7.7e-06 55.1 117 29.1
CSS0030347 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 1.0e-05 54.7 104 29.8
CAN.G149.10 Capsicum annuum HOM05D002397 ORTHO05D002667 1.0e-05 54.7 117 28.2
Cre15.g639400 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 1.0e-05 54.7 104 29.8
Glyma.15G161000 Glycine max HOM05D002397 ORTHO05D002667 1.0e-05 54.7 110 27.3
Gohir.D13G000600 Gossypium hirsutum HOM05D002397 ORTHO05D002667 1.0e-05 54.7 109 28.4


User provided reference genes

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