Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 1.7e-71 272.7 153 100.0
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.4e-70 269.6 152 98.7
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 6.1e-69 264.2 152 97.4
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.2e-66 255.8 153 95.4
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 2.2e-66 255.8 151 94.0
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 5.5e-62 241.1 148 91.9
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 2.7e-61 238.8 149 89.9
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.7e-61 238.8 149 89.9
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 6.1e-61 237.7 149 89.3
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.8e-60 236.1 149 88.6
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.8e-60 236.1 149 88.6
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 4.0e-60 235.0 149 88.6
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 2.6e-59 232.3 151 85.4
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 7.5e-59 230.7 151 86.8
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 7.5e-59 230.7 151 86.8
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 3.7e-58 228.4 151 83.4
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 3.7e-58 228.4 150 84.7
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 1.1e-57 226.9 148 82.4
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 2.4e-57 225.7 148 82.4
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 7.0e-57 224.2 149 83.9
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 1.2e-56 223.4 152 83.6
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 5.9e-56 221.1 148 81.1
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.9e-55 218.8 150 81.3
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 2.9e-55 218.8 149 82.6
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 3.8e-55 218.4 150 80.7
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 5.0e-55 218.0 152 81.6
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 6.5e-55 217.6 146 82.9
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.1e-54 216.9 152 80.3
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.5e-54 216.5 149 81.9
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 1.5e-54 216.5 152 80.3
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 1.5e-54 216.5 149 83.9
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.9e-54 216.1 152 80.9
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.9e-54 216.1 152 81.6
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 2.5e-54 215.7 153 79.7
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 2.5e-54 215.7 151 82.8
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 4.2e-54 214.9 149 81.2
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 5.5e-54 214.5 151 79.5
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 5.5e-54 214.5 152 80.3
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 7.2e-54 214.2 149 82.6
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 9.4e-54 213.8 151 81.5
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.6e-53 213.0 150 76.7
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 6.1e-53 211.1 145 81.4
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 6.1e-53 211.1 173 73.4
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 8.0e-53 210.7 143 83.2
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.0e-52 210.3 151 81.5
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.4e-52 209.9 145 80.0
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.8e-52 209.5 149 77.2
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.8e-52 209.5 147 79.6
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.8e-52 209.5 147 79.6
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 1.8e-52 209.5 147 78.2
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 5.2e-52 208.0 149 80.5
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 5.2e-52 208.0 149 79.9
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 5.2e-52 208.0 149 80.5
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 1.2e-51 206.8 147 79.6
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 1.5e-51 206.5 149 79.9
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 1.5e-51 206.5 149 79.9
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 2.0e-51 206.1 145 78.6
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 2.0e-51 206.1 151 76.2
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 3.4e-51 205.3 147 78.9
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 4.4e-51 204.9 151 79.5
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 5.7e-51 204.5 147 78.2
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 5.7e-51 204.5 148 78.4
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 7.5e-51 204.1 147 78.9
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 7.5e-51 204.1 149 78.5
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 7.5e-51 204.1 147 78.2
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 9.8e-51 203.8 149 78.5
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 9.8e-51 203.8 150 77.3
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 9.8e-51 203.8 150 77.3
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 1.3e-50 203.4 149 78.5
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.3e-50 203.4 150 77.3
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 1.7e-50 203.0 150 74.7
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 2.2e-50 202.6 149 77.9
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 2.2e-50 202.6 145 76.6
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 2.8e-50 202.2 149 75.8
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 3.7e-50 201.8 149 77.9
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 2.4e-49 199.1 151 74.2
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 5.4e-49 198.0 149 77.2
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 7.0e-49 197.6 151 74.2
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 1.2e-48 196.8 146 74.7
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 2.7e-48 195.7 151 72.8
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 5.9e-48 194.5 148 75.7
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 5.9e-48 194.5 151 73.5
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.2e-47 192.6 143 72.7
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 2.2e-47 192.6 131 84.0
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.2e-46 188.7 145 69.0
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 2.1e-45 186.0 147 71.4
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 3.6e-45 185.3 151 70.2
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 4.7e-45 184.9 140 71.4
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 4.0e-44 181.8 150 72.7
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 7.5e-43 177.6 151 70.2
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 6.3e-42 174.5 112 86.6
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 8.3e-42 174.1 147 69.4
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 8.3e-42 174.1 148 73.0
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 1.4e-41 173.3 148 70.3
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 5.4e-41 171.4 111 86.5
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.2e-40 170.2 148 65.5
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.3e-39 166.8 151 66.9
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 1.6e-37 159.8 151 66.9
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 4.7e-37 158.3 147 66.0
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 6.1e-37 157.9 224 48.2
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.0e-36 155.6 142 62.0
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 1.2e-35 153.7 110 78.2
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 2.0e-35 152.9 151 65.6
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 9.8e-35 150.6 125 72.8
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 4.9e-34 148.3 151 60.9
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 4.6e-32 141.7 170 57.6
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.7e-31 139.8 156 59.6
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 8.6e-31 137.5 144 52.8
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 1.1e-30 137.1 151 60.9
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 1.5e-30 136.7 115 66.1
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 1.5e-30 136.7 113 72.6
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 4.3e-30 135.2 112 66.1
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 5.6e-30 134.8 137 53.3
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 3.1e-28 129.0 151 57.6
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 8.9e-28 127.5 118 62.7
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.2e-27 127.1 138 49.3
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 2.0e-27 126.3 104 67.3
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.6e-27 125.9 92 77.2
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.4e-27 125.2 151 57.6
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 4.4e-27 125.2 151 57.6
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 3.5e-24 115.5 81 81.5
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 4.3e-22 108.6 133 56.4
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 5.4e-17 91.7 73 72.6
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 1.5e-11 73.6 147 38.8
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 7.6e-11 71.2 53 67.9
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 9.2e-09 64.3 128 41.4
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 9.2e-09 64.3 44 75.0
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 1.2e-08 63.9 42 78.6
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 1.5e-06 57.0 148 31.1
Oeu011770.1 Olea europaea HOM05D004115 ORTHO05D005004 2.5e-06 56.2 42 66.7


User provided reference genes

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