Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 0.0e+00 1205.3 617 100.0
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 0.0e+00 1178.7 618 97.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 0.0e+00 1132.5 617 93.0
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 0.0e+00 1119.4 624 91.2
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 0.0e+00 1112.1 628 90.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 0.0e+00 1101.3 618 91.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1100.9 618 90.8
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 0.0e+00 1099.0 618 90.3
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 0.0e+00 1091.6 618 89.6
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 0.0e+00 1089.7 618 89.5
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1087.4 618 89.3
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 0.0e+00 1085.9 617 89.3
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 0.0e+00 1077.8 617 88.5
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1075.8 618 88.5
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.2e-312 1073.9 618 88.3
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 4.2e-312 1073.9 618 88.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 8.4e-312 1073.2 618 88.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.0e-311 1071.2 614 87.5
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.6e-309 1063.9 614 87.1
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 6.0e-309 1063.5 617 86.9
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 5.1e-308 1060.4 617 86.7
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.5e-307 1058.1 618 87.1
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.7e-306 1054.3 617 86.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 4.0e-305 1050.8 641 83.9
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.0e-304 1048.5 617 85.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 617 85.7
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.2e-303 1045.0 616 86.9
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.8e-303 1044.3 617 85.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 8.4e-303 1043.1 617 85.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.4e-302 1041.6 618 85.8
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 684 79.5
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.3e-299 1031.2 616 84.1
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.7e-298 1027.7 656 81.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.2e-298 1026.9 618 84.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.1e-297 1026.2 618 84.6
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.4e-297 1025.8 617 84.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.1e-297 1024.6 618 84.3
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 4.0e-297 1024.2 618 84.5
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 5.3e-297 1023.8 619 84.0
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.5e-296 1022.3 619 85.3
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.0e-295 1019.6 623 83.1
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 4.2e-294 1014.2 617 83.5
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.5e-293 1011.1 618 82.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.5e-293 1011.1 618 82.8
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 6.7e-292 1006.9 621 82.4
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 8.7e-292 1006.5 617 81.8
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.4e-289 998.4 616 81.7
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.1e-289 998.0 618 81.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 9.0e-289 996.5 616 81.3
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.6e-288 995.0 616 81.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.6e-288 995.0 753 71.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 3.4e-288 994.6 616 81.8
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 2.2e-287 991.9 616 81.5
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.9e-287 991.5 622 80.9
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.8e-287 991.1 617 80.7
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 8.5e-287 989.9 613 80.9
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.1e-286 989.6 613 80.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 3.2e-286 988.0 616 81.2
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.6e-285 985.7 616 81.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 1.6e-285 985.7 610 81.5
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.1e-284 980.7 644 77.3
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.1e-284 980.7 616 80.5
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 8.8e-284 979.9 609 80.1
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 8.8e-284 979.9 649 77.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.3e-279 966.1 541 89.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 2.7e-277 958.4 617 78.0
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 4.7e-277 957.6 616 79.1
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.0e-276 954.9 629 76.9
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.0e-275 952.2 516 92.6
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 7.4e-275 950.3 614 77.5
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.7e-274 949.1 617 77.6
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.8e-274 948.3 614 77.2
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.1e-273 946.4 614 78.3
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 3.1e-273 944.9 618 77.7
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.5e-272 941.0 614 78.2
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.0e-268 928.3 614 76.9
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 8.8e-268 926.8 616 75.6
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 2.0e-267 925.6 574 80.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 1.7e-266 922.5 617 75.9
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 6.3e-266 920.6 616 76.1
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.2e-264 916.4 516 88.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.0e-264 915.6 574 80.8
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.7e-263 912.5 633 74.9
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 2.1e-261 905.6 617 75.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 4.0e-260 901.4 599 75.6
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.2e-260 901.0 623 76.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.6e-259 898.7 639 73.4
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 2.2e-258 895.6 575 80.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 5.3e-257 891.0 615 73.5
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.0e-256 889.0 601 74.7
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.3e-247 859.0 513 85.4
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 7.2e-246 854.0 616 72.1
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.2e-240 836.6 616 68.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.6e-237 825.1 557 78.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 4.7e-229 798.1 446 89.9
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 5.6e-222 774.6 615 61.6
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 7.3e-222 774.2 468 82.3
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 9.5e-222 773.9 551 74.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.4e-210 734.6 619 59.3
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.5e-203 713.4 614 59.0
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.0e-188 662.1 649 52.7
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 3.1e-180 636.0 361 90.0
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.0e-167 594.3 494 67.6
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.4e-167 594.0 342 90.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.8e-165 586.3 360 84.2
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.2e-161 572.4 616 49.5
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.6e-155 553.1 616 47.6
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-154 551.2 391 74.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.4e-140 502.3 364 69.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.8e-132 477.2 374 72.7
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 8.9e-127 458.4 603 45.3
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 9.2e-124 448.4 511 45.6
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.0e-119 434.9 457 58.6
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.2e-115 421.4 282 79.8
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 6.2e-80 302.8 171 90.1
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.1e-79 302.0 175 86.9
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.5e-68 263.1 149 91.3
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.2e-67 261.9 186 66.7
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 6.9e-63 246.1 144 88.2
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.2e-62 245.4 134 91.8
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-59 232.6 122 95.9
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 2.9e-53 214.2 117 88.9
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 3.6e-51 207.2 151 72.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.5e-44 183.3 135 68.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 9.4e-44 182.6 106 83.0
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.0e-42 179.1 105 80.0
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.8e-42 178.3 105 87.6
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.7e-40 171.8 178 55.1
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-36 158.3 86 94.2
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.6e-33 147.9 100 78.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.2e-28 130.6 74 89.2
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.3e-26 124.8 58 98.3
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 3.4e-25 120.9 106 54.7
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 5.7e-25 120.2 117 63.2
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-23 115.9 84 73.8
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.0e-22 111.7 76 75.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.5e-20 104.8 59 76.3
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.5e-20 104.8 59 76.3
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-19 102.4 59 78.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.2e-19 102.4 59 78.0
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 6.8e-18 96.7 54 83.3
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 2.2e-16 91.7 50 80.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 7.7e-14 83.2 53 69.8
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.5e-12 78.2 80 53.8
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.7e-11 73.9 51 60.8
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.0e-10 72.8 43 74.4
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.4e-10 72.4 48 79.2
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 9.8e-09 66.2 53 69.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-08 65.5 67 55.2
MD05G1162600 Malus domestica HOM05D004954 ORTHO05D006267 9.2e-07 59.7 32 93.8
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.5e-06 57.8 34 79.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.8e-06 56.6 33 81.8


User provided reference genes

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