Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1152100 Malus domestica HOM05D004226 ORTHO05D004842 2.6e-92 342.0 176 100.0
MD05G1159600 Malus domestica HOM05D004226 ORTHO05D004842 2.9e-75 285.4 179 83.8
Prupe.8G190400 Prunus persica HOM05D004226 ORTHO05D004842 8.9e-32 141.0 177 48.6
CiPaw.13G055300 Carya illinoinensis HOM05D004226 ORTHO05D004842 6.2e-25 118.2 168 47.0
Cfa010569 Carpinus fangiana HOM05D004226 ORTHO05D004842 1.2e-23 114.0 159 44.7
Haze_03501 Corylus avellana HOM05D004226 ORTHO05D004842 5.8e-23 111.7 159 43.4
Ciclev10016998m.g Citrus clementina HOM05D004226 ORTHO05D004842 9.9e-23 110.9 166 43.4
Manes.12G054100 Manihot esculenta HOM05D004226 ORTHO05D004842 2.9e-22 109.4 171 42.1
Potri.002G251200 Populus trichocarpa HOM05D004226 ORTHO05D004842 1.1e-21 107.5 160 41.9
Actinidia23795 Actinidia chinensis HOM05D004226 ORTHO05D004842 1.9e-21 106.7 166 41.0
Gorai.007G159600 Gossypium raimondii HOM05D004226 ORTHO05D004842 1.9e-21 106.7 172 42.4
ClCG05G015470 Citrullus lanatus HOM05D004226 ORTHO05D004842 4.2e-21 105.5 172 42.4
THA.LOC104802646 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 5.4e-21 105.1 147 44.2
Phvul.008G136900 Phaseolus vulgaris HOM05D004226 ORTHO05D004842 9.3e-21 104.4 169 40.2
PGR083G1064 Punica granatum HOM05D004226 ORTHO05D004842 9.3e-21 104.4 156 44.9
Eucgr.H00726 Eucalyptus grandis HOM05D004226 ORTHO05D004842 1.6e-20 103.6 167 41.9
HanXRQChr09g0257641 Helianthus annuus HOM05D004226 ORTHO05D004842 1.6e-20 103.6 152 42.8
Gohir.D11G148800 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.1e-20 103.2 172 41.3
Lsat_1_v5_gn_8_98041 Lactuca sativa HOM05D004226 ORTHO05D004842 2.7e-20 102.8 163 39.9
TAR633G1997 Trochodendron aralioides HOM05D004226 ORTHO05D004842 3.5e-20 102.4 141 44.0
HanXRQChr16g0507911 Helianthus annuus HOM05D004226 ORTHO05D004842 4.6e-20 102.1 164 40.2
Nitab4.5_0000038g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 4.6e-20 102.1 162 41.4
Nitab4.5_0009151g0020 Nicotiana tabacum HOM05D004226 ORTHO05D004842 4.6e-20 102.1 162 41.4
ECA247G2547 Erigeron canadensis HOM05D004226 ORTHO05D004842 6.0e-20 101.7 159 38.4
Gohir.A11G142500 Gossypium hirsutum HOM05D004226 ORTHO05D004842 6.0e-20 101.7 172 40.7
Oeu003656.1 Olea europaea HOM05D004226 ORTHO05D004842 6.0e-20 101.7 166 43.4
Duzib138G1045 Durio zibethinus HOM05D004226 ORTHO05D004842 7.8e-20 101.3 169 43.2
HanXRQChr08g0231431 Helianthus annuus HOM05D004226 ORTHO05D004842 1.3e-19 100.5 162 42.6
THA.LOC104822467 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 1.7e-19 100.1 175 38.9
TAR365G1191 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.7e-19 100.1 149 43.0
vmacro02815 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 1.7e-19 100.1 140 42.1
MELO3C003732.2 Cucumis melo HOM05D004226 ORTHO05D004842 3.0e-19 99.4 171 40.4
Cc01_g16140 Coffea canephora HOM05D004226 ORTHO05D004842 3.9e-19 99.0 165 38.8
Glyma.18G152900 Glycine max HOM05D004226 ORTHO05D004842 3.9e-19 99.0 169 39.6
Lalb_Chr01g0021991 Lupinus albus HOM05D004226 ORTHO05D004842 3.9e-19 99.0 172 35.5
vmacro14692 Vaccinium macrocarpon HOM05D004226 ORTHO05D004842 5.1e-19 98.6 171 39.2
EL10Ac5g10626 Beta vulgaris HOM05D004226 ORTHO05D004842 6.6e-19 98.2 165 37.0
CANSAT01G0104 Cannabis sativa HOM05D004226 ORTHO05D004842 6.6e-19 98.2 172 38.4
VMungo1383G2422 Vigna mungo HOM05D004226 ORTHO05D004842 6.6e-19 98.2 169 39.1
Duzib133G0243 Durio zibethinus HOM05D004226 ORTHO05D004842 8.7e-19 97.8 169 39.6
BolC7t44438H Brassica oleracea HOM05D004226 ORTHO05D004842 1.9e-18 96.7 160 41.9
QL09p046251 Quercus lobata HOM05D004226 ORTHO05D004842 1.9e-18 96.7 177 36.7
TAR362G0792 Trochodendron aralioides HOM05D004226 ORTHO05D004842 1.9e-18 96.7 143 44.1
DCAR_018624 Daucus carota HOM05D004226 ORTHO05D004842 2.5e-18 96.3 150 39.3
Hund02794 Selenicereus undatus HOM05D004226 ORTHO05D004842 2.5e-18 96.3 169 40.2
Sc17g0001670 Simmondsia chinensis HOM05D004226 ORTHO05D004842 2.5e-18 96.3 153 41.8
Cpa.g.sc8.73 Carica papaya HOM05D004226 ORTHO05D004842 3.3e-18 95.9 168 40.5
CsaV3_3G046080 Cucumis sativus L. HOM05D004226 ORTHO05D004842 3.3e-18 95.9 171 40.9
HPP92_024259 Vanilla planifolia HOM05D004226 ORTHO05D004842 3.3e-18 95.9 159 39.0
C07p39180 Brassica napus HOM05D004226 ORTHO05D004842 5.6e-18 95.1 162 42.0
Dinv28812 Davidia involucrata HOM05D004226 ORTHO05D004842 5.6e-18 95.1 167 38.3
Migut.N00664 Erythranthe guttata HOM05D004226 ORTHO05D004842 5.6e-18 95.1 170 37.6
Thhalv10005050m.g Eutrema salsugineum HOM05D004226 ORTHO05D004842 9.6e-18 94.4 166 41.0
ECA236G1737 Erigeron canadensis HOM05D004226 ORTHO05D004842 1.6e-17 93.6 154 39.6
Hma1.2p1_0781F.1_g216920 Hydrangea macrophylla HOM05D004226 ORTHO05D004842 1.6e-17 93.6 182 38.5
Lj1g0015941 Lotus japonicus HOM05D004226 ORTHO05D004842 1.6e-17 93.6 171 38.6
Nn1g08255 Nelumbo nucifera HOM05D004226 ORTHO05D004842 2.1e-17 93.2 162 39.5
DCAR_012646 Daucus carota HOM05D004226 ORTHO05D004842 2.8e-17 92.8 164 37.8
Actinidia34543 Actinidia chinensis HOM05D004226 ORTHO05D004842 3.6e-17 92.4 166 37.3
Rhsim13G0052600 Rhododendron simsii HOM05D004226 ORTHO05D004842 3.6e-17 92.4 142 43.0
Glyma.08G344200 Glycine max HOM05D004226 ORTHO05D004842 4.8e-17 92.0 169 37.9
BcaC06g30793 Brassica carinata HOM05D004226 ORTHO05D004842 6.2e-17 91.7 144 41.7
AUR62008122 Chenopodium quinoa HOM05D004226 ORTHO05D004842 6.2e-17 91.7 157 38.2
TWI36G1598 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 6.2e-17 91.7 174 39.1
Ah.11g051030 Amaranthus hybridus HOM05D004226 ORTHO05D004842 8.1e-17 91.3 147 40.8
TWI18G1341 Tripterygium wilfordii HOM05D004226 ORTHO05D004842 8.1e-17 91.3 169 36.7
MSTRG.18494 Avicennia marina HOM05D004226 ORTHO05D004842 1.1e-16 90.9 171 35.1
RcHm_v2.0_Chr6g0282841 Rosa chinensis HOM05D004226 ORTHO05D004842 1.1e-16 90.9 165 38.8
Sabra02G0191000 Salix brachista HOM05D004226 ORTHO05D004842 1.1e-16 90.9 193 37.3
Sed0006210 Sechium edule HOM05D004226 ORTHO05D004842 1.1e-16 90.9 169 40.8
TPR.G26804 Trifolium pratense HOM05D004226 ORTHO05D004842 1.1e-16 90.9 171 36.8
Lj2A1117T18 Lonicera japonica HOM05D004226 ORTHO05D004842 1.4e-16 90.5 141 36.2
Sp2g18850 Schrenkiella parvula HOM05D004226 ORTHO05D004842 1.4e-16 90.5 163 38.0
Dinv10439 Davidia involucrata HOM05D004226 ORTHO05D004842 1.8e-16 90.1 166 36.1
Migut.D00735 Erythranthe guttata HOM05D004226 ORTHO05D004842 1.8e-16 90.1 169 37.9
Sopen06g002500 Solanum pennellii HOM05D004226 ORTHO05D004842 1.8e-16 90.1 161 33.5
A06p39150 Brassica napus HOM05D004226 ORTHO05D004842 2.4e-16 89.7 161 40.4
A09p04540 Brassica napus HOM05D004226 ORTHO05D004842 2.4e-16 89.7 161 38.5
BraA09t36089Z Brassica rapa HOM05D004226 ORTHO05D004842 2.4e-16 89.7 161 38.5
Psat3g151000 Pisum sativum HOM05D004226 ORTHO05D004842 2.4e-16 89.7 164 37.2
Hund09468 Selenicereus undatus HOM05D004226 ORTHO05D004842 2.4e-16 89.7 166 37.3
PGSC0003DMG400027348 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.4e-16 89.7 163 35.6
AUR62028700 Chenopodium quinoa HOM05D004226 ORTHO05D004842 3.1e-16 89.4 150 37.3
BraA06t26830Z Brassica rapa HOM05D004226 ORTHO05D004842 4.0e-16 89.0 161 40.4
Lalb_Chr03g0041091 Lupinus albus HOM05D004226 ORTHO05D004842 4.0e-16 89.0 172 36.6
Aqoxy2G03959 Aquilegia oxysepala HOM05D004226 ORTHO05D004842 5.3e-16 88.6 137 40.9
DCAR_004767 Daucus carota HOM05D004226 ORTHO05D004842 9.0e-16 87.8 174 33.3
Medtr7g052690 Medicago truncatula HOM05D004226 ORTHO05D004842 9.0e-16 87.8 172 34.3
Gohir.A07G090200 Gossypium hirsutum HOM05D004226 ORTHO05D004842 1.2e-15 87.4 150 39.3
BolC2t11714H Brassica oleracea HOM05D004226 ORTHO05D004842 1.5e-15 87.0 159 40.9
Solyc06g007610.2 Solanum lycopersicum HOM05D004226 ORTHO05D004842 1.5e-15 87.0 161 32.9
Sopen11g003480 Solanum pennellii HOM05D004226 ORTHO05D004842 1.5e-15 87.0 161 36.0
ATR0686G035 Amborella trichopoda HOM05D004226 ORTHO05D004842 2.0e-15 86.7 148 38.5
BcaC03g17654 Brassica carinata HOM05D004226 ORTHO05D004842 2.0e-15 86.7 159 40.9
CDE05G1161 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 2.0e-15 86.7 148 39.2
THA.LOC104818997 Tarenaya hassleriana HOM05D004226 ORTHO05D004842 2.0e-15 86.7 170 37.6
A02p37490 Brassica napus HOM05D004226 ORTHO05D004842 2.6e-15 86.3 157 40.1
C02p56560 Brassica napus HOM05D004226 ORTHO05D004842 2.6e-15 86.3 159 40.9
Gohir.D07G094900 Gossypium hirsutum HOM05D004226 ORTHO05D004842 2.6e-15 86.3 150 38.7
PGSC0003DMG400020653 Solanum tuberosum HOM05D004226 ORTHO05D004842 2.6e-15 86.3 161 32.9
BcaC04g23773 Brassica carinata HOM05D004226 ORTHO05D004842 3.4e-15 85.9 144 39.6
BolC9t53412H Brassica oleracea HOM05D004226 ORTHO05D004842 3.4e-15 85.9 144 39.6
Peaxi162Scf00372g00004 Petunia axillaris HOM05D004226 ORTHO05D004842 3.4e-15 85.9 174 36.8
C09p04850 Brassica napus HOM05D004226 ORTHO05D004842 4.5e-15 85.5 170 37.6
BraA02t08736Z Brassica rapa HOM05D004226 ORTHO05D004842 4.5e-15 85.5 160 38.8
Oeu057834.2 Olea europaea HOM05D000039 ORTHO05D005440 4.5e-15 85.5 151 40.4
Aa31sc186G10 Aethionema arabicum HOM05D004226 ORTHO05D004842 5.8e-15 85.1 164 35.4
Gorai.001G102200 Gossypium raimondii HOM05D004226 ORTHO05D004842 5.8e-15 85.1 150 38.0
Actinidia30018 Actinidia chinensis HOM05D004226 ORTHO05D004842 7.6e-15 84.7 165 38.2
COL.COLO4_26572 Corchorus olitorius HOM05D004226 ORTHO05D004842 9.9e-15 84.3 169 37.3
Migut.D00732 Erythranthe guttata HOM05D004226 ORTHO05D004842 9.9e-15 84.3 173 35.8
Lj3g0009756 Lotus japonicus HOM05D004226 ORTHO05D004842 1.7e-14 83.6 129 43.4
CSS0019192 Camellia sinensis var. sinensis HOM05D004226 ORTHO05D004842 2.9e-14 82.8 129 39.5
SEGI_00481 Sequoiadendron giganteum HOM05D004226 ORTHO05D004842 6.4e-14 81.6 175 36.0
SGA_v2.0_scaffold624G53238 Striga asiatica HOM05D004226 ORTHO05D004842 6.4e-14 81.6 166 32.5
Nitab4.5_0002311g0050 Nicotiana tabacum HOM05D004226 ORTHO05D004842 8.4e-14 81.3 169 35.5
SMO146G0354 Selaginella moellendorffii HOM05D004226 ORTHO05D004842 1.9e-13 80.1 137 34.3
PSO017G4362 Papaver somniferum HOM05D004226 ORTHO05D004842 2.4e-13 79.7 156 35.3
Rhsim01G0248500 Rhododendron simsii HOM05D004226 ORTHO05D004842 2.4e-13 79.7 168 35.1
SGA_v2.0_scaffold8G04494 Striga asiatica HOM05D004226 ORTHO05D004842 2.4e-13 79.7 166 33.1
AL8G21330 Arabidopsis lyrata HOM05D004226 ORTHO05D004842 3.2e-13 79.3 149 36.2
Mapoly0001s0501 Marchantia polymorpha HOM05D004226 ORTHO05D004842 4.2e-13 79.0 164 33.5
AT5G48480 Arabidopsis thaliana HOM05D004226 ORTHO05D004842 5.4e-13 78.6 162 34.6
Lj3g0001126 Lotus japonicus HOM05D004226 ORTHO05D004842 5.4e-13 78.6 138 42.0
PSO675G4654 Papaver somniferum HOM05D004226 ORTHO05D004842 5.4e-13 78.6 142 36.6
SGA_v2.0_scaffold29G12070 Striga asiatica HOM05D004226 ORTHO05D004842 5.4e-13 78.6 194 29.9
Nitab4.5_0002167g0150 Nicotiana tabacum HOM05D004226 ORTHO05D004842 7.1e-13 78.2 169 34.3
CAN.G181.39 Capsicum annuum HOM05D004226 ORTHO05D004842 1.2e-12 77.4 133 39.1
FAN15G3314 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.2e-12 77.4 160 36.9
FAN24G0678 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.6e-12 77.0 159 34.6
FAN27G2858 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.6e-12 77.0 160 36.9
FAN27G3147 Fragaria x ananassa HOM05D004226 ORTHO05D004842 1.6e-12 77.0 160 36.9
MSTRG.21303 Avicennia marina HOM05D004226 ORTHO05D004842 2.1e-12 76.6 167 31.7
Carub.0008s0806 Capsella rubella HOM05D004226 ORTHO05D004842 2.1e-12 76.6 142 35.2
FvH4_2g17810 Fragaria vesca HOM05D004226 ORTHO05D004842 3.5e-12 75.9 159 34.0
CDE05G0628 Ceratophyllum demersum HOM05D004226 ORTHO05D004842 1.3e-11 73.9 98 45.9
BcaB07g30025 Brassica carinata HOM05D004226 ORTHO05D004842 5.1e-11 72.0 145 34.5
Ca_07469_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 8.7e-11 71.2 93 45.2
Ca_30573_v3 Cicer arietinum L. HOM05D004226 ORTHO05D004842 8.7e-11 71.2 93 45.2
SHI10249 Sapria himalayana HOM05D004226 ORTHO05D004842 1.1e-10 70.9 141 35.5
BcaB07g30020 Brassica carinata HOM05D004226 ORTHO05D004842 4.3e-10 68.9 102 43.1
Atru.chr6.3547 Acer truncatum HOM05D004226 ORTHO05D004842 1.1e-08 64.3 122 38.5
Pp3c13_5750 Physcomitrium patens HOM05D004226 ORTHO05D004842 1.8e-08 63.5 143 32.9
CARHR183600 Cardamine hirsuta HOM05D004226 ORTHO05D004842 4.0e-08 62.4 164 28.7
Duzib168G0485 Durio zibethinus HOM05D004226 ORTHO05D004842 2.0e-07 60.1 146 31.5
Cfa011865 Carpinus fangiana HOM05D004226 ORTHO05D004842 3.8e-06 55.8 86 46.5
Sc19g0005500 Simmondsia chinensis HOM05D004226 ORTHO05D004842 8.4e-06 54.7 67 43.3


User provided reference genes

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