Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 4.0e-56 221.1 104 100.0
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 3.9e-11 71.6 64 59.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.7e-11 70.9 73 53.4
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.8e-11 70.5 73 53.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.5e-10 69.7 64 57.8
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.5e-10 69.7 55 65.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 2.0e-10 69.3 55 65.5
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 2.5e-10 68.9 63 57.1
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.5e-10 68.9 40 77.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 2.5e-10 68.9 63 57.1
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.5e-10 68.9 63 57.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.5e-10 68.9 55 65.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.5e-10 68.9 55 65.5
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.5e-10 68.9 63 57.1
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 2.5e-10 68.9 55 65.5
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.3e-10 68.6 55 63.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 3.3e-10 68.6 55 63.6
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.3e-10 68.6 55 63.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.3e-10 68.6 64 57.8
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.3e-10 68.6 55 63.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.3e-10 68.2 55 63.6
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-10 68.2 55 63.6
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.3e-10 68.2 55 63.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 4.3e-10 68.2 55 63.6
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 4.3e-10 68.2 35 88.6
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.7e-10 67.8 47 70.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 5.7e-10 67.8 55 63.6
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.4e-10 67.4 55 61.8
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.4e-10 67.4 55 61.8
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.4e-10 67.4 55 61.8
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.4e-10 67.4 55 61.8
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 9.7e-10 67.0 55 63.6
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 9.7e-10 67.0 55 63.6
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 9.7e-10 67.0 63 55.6
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 9.7e-10 67.0 55 61.8
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 9.7e-10 67.0 55 61.8
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.3e-09 66.6 55 61.8
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.3e-09 66.6 55 61.8
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.7e-09 66.2 72 51.4
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.7e-09 66.2 64 54.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.7e-09 66.2 55 61.8
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.7e-09 66.2 55 61.8
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.7e-09 66.2 55 61.8
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.7e-09 66.2 43 69.8
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.7e-09 66.2 55 61.8
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.2e-09 65.9 43 69.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-09 65.9 55 61.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.2e-09 65.9 64 54.7
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 2.2e-09 65.9 64 54.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 2.2e-09 65.9 64 54.7
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.8e-09 65.5 55 61.8
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.8e-09 65.5 55 60.0
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.8e-09 65.5 64 54.7
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.7e-09 65.1 35 82.9
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.8e-09 64.7 43 67.4
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.8e-09 64.7 55 61.8
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 4.8e-09 64.7 35 80.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.8e-09 64.7 63 54.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 6.3e-09 64.3 55 58.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 6.3e-09 64.3 35 80.0
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.3e-09 64.3 35 80.0
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.3e-09 64.3 35 80.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.3e-09 64.3 35 80.0
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.3e-09 64.3 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 8.2e-09 63.9 71 46.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 8.2e-09 63.9 55 60.0
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 8.2e-09 63.9 35 80.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 8.2e-09 63.9 55 60.0
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.2e-09 63.9 55 61.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.1e-08 63.5 35 77.1
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.1e-08 63.5 36 77.8
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.4e-08 63.2 35 77.1
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.4e-08 63.2 35 80.0
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.4e-08 63.2 55 60.0
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.4e-08 63.2 35 77.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.8e-08 62.8 64 53.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.8e-08 62.8 34 82.4
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.8e-08 62.8 64 53.1
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.8e-08 62.8 64 53.1
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.8e-08 62.8 64 51.6
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.8e-08 62.8 35 80.0
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.8e-08 62.8 43 62.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-08 62.4 55 58.2
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.4e-08 62.4 35 77.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.4e-08 62.4 35 77.1
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.4e-08 62.4 35 77.1
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.4e-08 62.4 35 77.1
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 3.1e-08 62.0 55 56.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.1e-08 61.6 55 58.2
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 4.1e-08 61.6 55 58.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 4.1e-08 61.6 55 58.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 4.1e-08 61.6 35 77.1
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.1e-08 61.6 35 77.1
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 6.9e-08 60.8 35 74.3
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 6.9e-08 60.8 63 54.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 6.9e-08 60.8 35 74.3
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 9.1e-08 60.5 35 74.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.5e-07 59.7 63 52.4
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-07 59.3 35 74.3
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.6e-07 58.9 63 49.2
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.4e-07 58.5 35 74.3
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.4e-07 58.5 63 50.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.5e-07 58.2 63 50.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.9e-06 55.5 30 80.0


User provided reference genes

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