Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 7.5e-135 483.8 236 100.0
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.8e-88 329.7 235 72.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.0e-83 313.9 235 68.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.0e-83 312.4 235 68.9
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.9e-82 309.7 235 68.1
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.5e-82 309.3 235 67.7
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 7.4e-82 307.8 232 68.5
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 7.9e-76 287.7 232 61.2
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 5.7e-74 281.6 232 59.1
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 8.2e-73 277.7 232 59.1
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.9e-72 274.6 235 58.7
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 1.5e-71 273.5 235 57.9
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 7.7e-71 271.2 234 59.4
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.0e-70 270.8 233 56.2
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.0e-70 270.8 237 59.9
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.7e-70 270.0 235 57.4
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.7e-70 270.0 234 59.4
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.2e-70 269.6 233 57.9
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.2e-70 269.6 230 58.3
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.5e-70 268.1 235 57.4
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.1e-69 267.3 248 54.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.1e-69 267.3 234 59.0
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.4e-69 266.9 232 57.3
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.4e-69 266.9 226 61.5
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.4e-69 266.9 230 57.0
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 3.2e-69 265.8 230 57.4
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 4.2e-69 265.4 229 56.8
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 5.5e-69 265.0 234 59.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 5.5e-69 265.0 235 55.3
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.2e-69 264.6 234 58.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.2e-68 263.8 232 56.5
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.6e-68 263.5 227 57.7
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.6e-68 263.5 230 56.5
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.6e-68 263.5 235 55.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.6e-68 263.5 235 55.3
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 2.1e-68 263.1 230 57.0
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 2.7e-68 262.7 233 57.1
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.7e-68 262.7 232 57.3
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.7e-68 262.7 234 56.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.6e-68 262.3 232 56.5
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.6e-68 262.3 233 56.2
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.6e-68 262.3 233 56.2
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.7e-68 261.9 269 50.9
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.1e-68 261.5 227 56.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 6.1e-68 261.5 229 56.3
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 6.1e-68 261.5 230 56.5
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 7.9e-68 261.2 233 54.9
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 7.9e-68 261.2 233 55.4
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.0e-67 260.8 233 54.9
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.0e-67 260.8 232 56.5
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.8e-67 260.0 227 56.8
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 1.8e-67 260.0 233 54.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.8e-67 260.0 233 57.5
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.8e-67 260.0 233 54.5
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.8e-67 260.0 233 55.4
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.8e-67 260.0 233 53.6
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 2.3e-67 259.6 235 54.5
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.3e-67 259.6 233 55.4
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.0e-67 259.2 230 57.0
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.0e-67 259.2 232 54.3
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.0e-67 259.2 233 55.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.0e-67 259.2 235 54.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 3.9e-67 258.8 232 54.3
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 8.8e-67 257.7 230 55.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 8.8e-67 257.7 236 56.8
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.5e-66 256.9 238 55.9
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.0e-66 256.5 227 56.4
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.0e-66 256.5 232 55.2
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 2.6e-66 256.1 232 53.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 2.6e-66 256.1 230 53.0
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.3e-66 255.8 233 53.2
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.3e-66 255.8 235 54.5
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-66 255.8 233 54.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.7e-66 255.0 232 54.3
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 5.7e-66 255.0 235 53.6
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 7.4e-66 254.6 227 55.9
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 9.7e-66 254.2 230 53.5
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 9.7e-66 254.2 233 54.9
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 9.7e-66 254.2 232 54.7
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 9.7e-66 254.2 233 54.1
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.7e-65 253.4 232 54.7
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.2e-65 253.1 230 52.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 2.2e-65 253.1 232 55.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 3.7e-65 252.3 236 55.5
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.7e-65 252.3 232 54.3
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.8e-65 251.9 230 52.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 8.2e-65 251.1 234 54.7
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 1.4e-64 250.4 233 55.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 9.1e-64 247.7 221 57.0
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.2e-62 243.0 237 50.2
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 2.2e-62 243.0 233 52.4
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.0e-62 241.9 225 55.6
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.5e-61 240.4 175 70.9
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 8.0e-60 234.6 228 52.6
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.0e-59 234.2 202 56.9
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 2.6e-58 229.6 202 58.4
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 4.4e-58 228.8 235 48.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.3e-57 227.3 232 50.9
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 5.9e-55 218.4 205 52.2
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 1.0e-54 217.6 155 69.7
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-54 216.9 160 62.5
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 6.5e-54 214.9 205 51.7
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 3.2e-53 212.6 216 50.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 7.2e-53 211.5 211 49.8
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.6e-52 210.3 199 54.3
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.4e-51 207.2 156 60.9
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.8e-51 206.8 142 73.9
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.0e-51 206.1 153 62.7
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 6.8e-51 204.9 156 62.8
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.5e-50 203.8 149 63.1
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.5e-50 203.8 210 49.0
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.5e-50 203.8 180 56.1
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 5.7e-50 201.8 217 48.8
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 8.3e-49 198.0 209 48.8
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.1e-48 196.1 154 59.7
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 9.1e-48 194.5 210 49.5
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.3e-46 190.7 210 50.5
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.8e-43 180.3 232 43.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.3e-43 179.9 210 41.4
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.7e-39 166.4 235 40.4
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.3e-38 163.3 253 41.1
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.8e-38 162.5 205 46.8
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 8.0e-36 154.8 216 39.8
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 2.3e-35 153.3 93 76.3
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 3.7e-33 146.0 209 41.1
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.3e-30 137.5 151 49.7
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 5.0e-30 135.6 197 40.1
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.6e-29 132.1 100 62.0
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.6e-29 132.1 100 62.0
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.4e-27 127.5 129 50.4
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.2e-26 124.4 78 70.5
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.3e-25 120.9 237 33.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 3.7e-25 119.4 121 47.9
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.3e-21 105.9 61 75.4
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 8.1e-20 101.7 217 32.7
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.5e-13 80.1 126 39.7
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 4.7e-12 75.9 48 66.7
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 6.2e-12 75.5 141 35.5
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.4e-11 74.3 50 64.0
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.4e-10 69.3 46 65.2
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 5.8e-10 68.9 45 66.7
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-09 67.8 47 63.8
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.7e-09 66.2 45 68.9
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 3.2e-08 63.2 103 35.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 4.1e-08 62.8 53 54.7
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 3.9e-06 56.2 49 51.0


User provided reference genes

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