Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 2.8e-86 322.0 176 100.0
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 3.0e-51 205.7 176 76.7
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 6.8e-40 167.9 120 71.7
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.0e-39 166.4 117 70.1
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.4e-39 165.2 117 69.2
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 7.5e-39 164.5 117 69.2
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.5e-39 164.5 117 69.2
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 2.9e-38 162.5 117 69.2
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 2.9e-38 162.5 116 69.0
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 6.4e-38 161.4 127 63.0
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.1e-37 160.6 136 59.6
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 5.4e-37 158.3 116 65.5
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 7.1e-37 157.9 116 68.1
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.0e-35 152.5 140 58.6
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.3e-34 148.7 118 64.4
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 5.2e-32 141.7 116 62.9
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 6.8e-32 141.4 137 55.5
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 8.4e-30 134.4 111 59.5
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 6.0e-28 128.3 113 61.1
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.3e-27 126.3 120 56.7
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.3e-27 126.3 119 56.3
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.7e-27 124.4 154 47.4
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.1e-26 124.0 119 55.5
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.9e-26 123.2 101 64.4
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 2.5e-26 122.9 127 52.8
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.5e-26 122.9 151 47.7
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.5e-26 122.9 154 46.8
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 5.6e-26 121.7 119 55.5
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 1.1e-24 117.5 131 48.9
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 3.4e-23 112.5 105 56.2
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 3.4e-23 112.5 105 56.2
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 9.9e-23 110.9 119 53.8
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.9e-22 109.4 119 52.1
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 5.4e-21 105.1 114 50.9
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.3e-19 99.8 125 43.2
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 8.7e-19 97.8 122 50.0
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 1.1e-18 97.4 110 49.1
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.6e-18 95.1 122 45.1
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.1e-17 93.2 106 48.1
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 6.2e-17 91.7 95 51.6
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 8.1e-17 91.3 113 43.4
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 1.1e-16 90.9 97 49.5
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 2.4e-16 89.7 104 46.2
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 3.1e-16 89.4 97 49.5
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 4.0e-16 89.0 112 50.0
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 9.0e-16 87.8 89 53.9
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 3.4e-15 85.9 106 46.2
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.9e-15 84.3 92 52.2
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 2.9e-14 82.8 90 53.3
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 4.9e-14 82.0 102 51.0
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.2e-13 79.3 121 38.8
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 4.2e-13 79.0 100 51.0
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 7.1e-13 78.2 95 50.5
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 9.3e-13 77.8 98 43.9
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.2e-12 77.4 128 35.2
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.5e-12 75.9 127 34.6
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.0e-11 74.3 102 46.1
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.3e-11 73.9 128 35.2
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 1.3e-11 73.9 94 44.7
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.3e-11 73.9 86 50.0
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 3.0e-11 72.8 104 42.3
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 3.9e-11 72.4 101 45.5
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 6.7e-11 71.6 96 43.8
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 1.5e-10 70.5 90 44.4
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 1.5e-10 70.5 94 45.7
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 1.9e-10 70.1 75 48.0
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 3.3e-10 69.3 98 42.9
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 3.3e-10 69.3 101 42.6
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.1e-09 66.6 73 49.3
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.7e-09 65.9 72 50.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 8.1e-09 64.7 86 47.7
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 8.1e-09 64.7 84 47.6
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 1.4e-08 63.9 127 33.1
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 1.4e-08 63.9 98 36.7
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 1.4e-08 63.9 107 35.5
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.4e-08 63.9 74 50.0
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.4e-08 63.2 113 33.6
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-08 63.2 93 41.9
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 5.3e-08 62.0 93 45.2
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.9e-08 61.6 117 32.5
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 6.9e-08 61.6 96 37.5
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 6.9e-08 61.6 78 46.2
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 6.9e-08 61.6 73 45.2
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 9.0e-08 61.2 77 46.8
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.2e-07 60.8 74 48.6
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 2.6e-07 59.7 86 40.7
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 3.4e-07 59.3 118 40.7
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.4e-07 59.3 80 43.8
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.4e-07 59.3 80 43.8
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.4e-07 59.3 80 43.8
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.4e-07 59.3 80 43.8
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 3.4e-07 59.3 107 38.3
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 4.5e-07 58.9 63 52.4
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 4.5e-07 58.9 100 43.0
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 4.5e-07 58.9 60 51.7
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 5.8e-07 58.5 66 53.0
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 5.8e-07 58.5 101 38.6
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 9.9e-07 57.8 79 44.3
EL10Ac9g21340 Beta vulgaris HOM05D026051 ORTHO05D009943 1.3e-06 57.4 110 39.1
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 1.3e-06 57.4 100 39.0
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.3e-06 57.4 72 45.8
Sc08g0002710 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.3e-06 57.4 106 33.0
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.7e-06 57.0 103 37.9
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.7e-06 57.0 66 56.1
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 2.9e-06 56.2 73 46.6
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 2.9e-06 56.2 108 38.0
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.9e-06 56.2 76 43.4
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 3.8e-06 55.8 74 41.9
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.9e-06 55.5 91 36.3
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 4.9e-06 55.5 88 42.0
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 4.9e-06 55.5 79 40.5
SGA_v2.0_scaffold195G40813 Striga asiatica HOM05D007970 ORTHO05D009943 4.9e-06 55.5 81 42.0
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 6.4e-06 55.1 91 35.2
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 6.4e-06 55.1 101 35.6
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 6.4e-06 55.1 87 41.4
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 8.4e-06 54.7 91 36.3
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 8.4e-06 54.7 88 35.2
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 8.4e-06 54.7 91 42.9


User provided reference genes

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