Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1122300 Malus domestica HOM05D003525 ORTHO05D025801 1.4e-94 349.7 189 100.0
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 5.6e-24 115.2 65 92.3
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 1.2e-21 107.5 65 84.6
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 1.9e-16 90.1 65 78.5
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 1.9e-16 90.1 65 72.3
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 3.7e-15 85.9 76 65.8
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 9.0e-14 81.3 65 67.7
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.6e-13 79.7 65 66.2
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 5.8e-13 78.6 65 66.2
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.2e-12 76.6 65 63.1
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 2.9e-12 76.3 70 61.4
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 6.5e-12 75.1 81 58.0
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 6.5e-12 75.1 65 61.5
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 1.1e-11 74.3 81 56.8
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 2.5e-11 73.2 65 63.1
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.5e-11 73.2 65 61.5
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 4.2e-11 72.4 65 63.1
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 7.1e-11 71.6 65 66.2
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 9.3e-11 71.2 67 59.7
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 1.6e-10 70.5 68 60.3
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.6e-10 70.5 65 58.5
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 3.5e-10 69.3 64 67.2
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 4.6e-10 68.9 73 53.4
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 4.6e-10 68.9 68 54.4
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 4.6e-10 68.9 65 58.5
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 6.1e-10 68.6 68 54.4
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 7.9e-10 68.2 65 60.0
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 7.9e-10 68.2 65 58.5
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 7.9e-10 68.2 65 55.4
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 1.0e-09 67.8 61 60.7
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 1.0e-09 67.8 65 58.5
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.3e-09 67.4 72 58.3
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.3e-09 67.4 65 58.5
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 1.3e-09 67.4 65 58.5
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 1.8e-09 67.0 63 60.3
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 1.8e-09 67.0 102 44.1
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 1.8e-09 67.0 102 44.1
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.8e-09 67.0 66 56.1
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 1.8e-09 67.0 65 56.9
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 3.0e-09 66.2 66 59.1
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 3.0e-09 66.2 65 58.5
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 3.0e-09 66.2 65 56.9
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 3.0e-09 66.2 65 56.9
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 3.9e-09 65.9 69 60.9
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 3.9e-09 65.9 69 60.9
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 3.9e-09 65.9 65 55.4
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.9e-09 65.9 67 59.7
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 3.9e-09 65.9 69 60.9
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 5.1e-09 65.5 65 55.4
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 5.1e-09 65.5 65 60.0
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 6.7e-09 65.1 72 56.9
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 6.7e-09 65.1 61 57.4
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 6.7e-09 65.1 69 56.5
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 6.7e-09 65.1 65 53.8
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 6.7e-09 65.1 65 55.4
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 8.7e-09 64.7 65 56.9
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 8.7e-09 64.7 65 53.8
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 8.7e-09 64.7 65 53.8
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 8.7e-09 64.7 65 58.5
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 8.7e-09 64.7 66 54.5
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 8.7e-09 64.7 83 48.2
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 1.1e-08 64.3 65 53.8
Manes.02G225801 Manihot esculenta HOM05D003525 ORTHO05D025801 1.1e-08 64.3 67 58.2
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 1.1e-08 64.3 65 55.4
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 1.5e-08 63.9 68 57.4
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 1.5e-08 63.9 65 55.4
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 1.5e-08 63.9 65 53.8
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 1.9e-08 63.5 104 42.3
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.9e-08 63.5 65 56.9
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.9e-08 63.5 65 52.3
MBI16_g46920_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D025801 1.9e-08 63.5 65 52.3
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 1.9e-08 63.5 65 52.3
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 2.5e-08 63.2 66 56.1
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 2.5e-08 63.2 65 53.8
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 2.5e-08 63.2 66 51.5
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 2.5e-08 63.2 65 52.3
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 2.5e-08 63.2 64 62.5
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 2.5e-08 63.2 65 52.3
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 3.3e-08 62.8 74 51.4
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 3.3e-08 62.8 74 51.4
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 3.3e-08 62.8 68 54.4
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 3.3e-08 62.8 65 52.3
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 4.3e-08 62.4 135 36.3
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 4.3e-08 62.4 106 41.5
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 5.7e-08 62.0 94 41.5
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 5.7e-08 62.0 68 54.4
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 7.4e-08 61.6 94 46.8
FAN06G0442 Fragaria x ananassa HOM05D016616 ORTHO05D011996 7.4e-08 61.6 66 56.1
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 7.4e-08 61.6 67 50.7
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 7.4e-08 61.6 68 55.9
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 7.4e-08 61.6 67 50.7
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 7.4e-08 61.6 61 57.4
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 9.7e-08 61.2 67 52.2
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 9.7e-08 61.2 96 43.8
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 9.7e-08 61.2 65 55.4
Manes.08G077055 Manihot esculenta HOM05D003525 ORTHO05D025801 9.7e-08 61.2 67 56.7
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 9.7e-08 61.2 65 55.4
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.3e-07 60.8 68 50.0
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 1.3e-07 60.8 107 40.2
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 1.3e-07 60.8 65 50.8
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 1.3e-07 60.8 72 54.2
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.3e-07 60.8 68 52.9
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 1.3e-07 60.8 68 52.9
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 1.6e-07 60.5 108 40.7
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 1.6e-07 60.5 66 50.0
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 1.6e-07 60.5 65 53.8
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 2.2e-07 60.1 78 47.4
FAN13G2130 Fragaria x ananassa HOM05D000683 ORTHO05D000507 2.2e-07 60.1 67 56.7
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.2e-07 60.1 65 55.4
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 2.2e-07 60.1 67 55.2
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 2.2e-07 60.1 69 53.6
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 2.8e-07 59.7 61 54.1
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 2.8e-07 59.7 65 50.8
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.8e-07 59.7 66 54.5
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 2.8e-07 59.7 67 53.7
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 2.8e-07 59.7 63 55.6
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 4.8e-07 58.9 88 37.5
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 4.8e-07 58.9 65 52.3
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 6.3e-07 58.5 66 51.5
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 6.3e-07 58.5 65 47.7
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 1.1e-06 57.8 75 48.0
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 1.1e-06 57.8 103 40.8
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 1.4e-06 57.4 62 53.2
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 1.4e-06 57.4 103 39.8
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 1.4e-06 57.4 65 50.8
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.4e-06 57.4 65 46.2
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.4e-06 57.4 65 46.2
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 1.4e-06 57.4 65 50.8
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 1.4e-06 57.4 65 50.8
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 1.8e-06 57.0 63 54.0
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 1.8e-06 57.0 67 52.2
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 1.8e-06 57.0 68 50.0
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 2.4e-06 56.6 65 49.2
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 2.4e-06 56.6 66 50.0
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 3.1e-06 56.2 66 53.0
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 3.1e-06 56.2 65 49.2
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 3.1e-06 56.2 72 50.0
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 3.1e-06 56.2 62 54.8
FAN09G3825 Fragaria x ananassa HOM05D000097 ORTHO05D011996 4.1e-06 55.8 66 51.5
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 5.3e-06 55.5 65 46.2
FAN18G1458 Fragaria x ananassa HOM05D000072 ORTHO05D011996 5.3e-06 55.5 65 52.3
FAN22G0245 Fragaria x ananassa HOM05D016616 ORTHO05D011996 5.3e-06 55.5 67 53.7
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 5.3e-06 55.5 55 52.7
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 6.9e-06 55.1 98 42.9
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 9.0e-06 54.7 65 52.3
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 9.0e-06 54.7 65 50.8
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 9.0e-06 54.7 65 50.8


User provided reference genes

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