Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 3.8e-134 481.5 243 100.0
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 2.0e-114 416.0 234 88.5
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 8.6e-110 400.6 233 84.1
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 1.5e-109 399.8 229 86.0
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.6e-108 396.4 234 82.9
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 2.0e-106 389.4 230 83.5
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.0e-102 375.6 236 78.0
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.1e-101 373.6 236 78.8
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.5e-101 373.2 234 77.4
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.5e-101 373.2 234 76.9
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.9e-101 372.9 230 79.6
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 1.9e-101 372.9 233 78.5
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.5e-101 372.5 233 78.1
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 3.6e-100 368.6 235 77.0
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.6e-100 368.6 229 77.7
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 4.7e-100 368.2 230 76.1
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 1.4e-99 366.7 232 76.7
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.4e-99 366.7 234 77.4
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.8e-99 366.3 232 76.3
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 3.1e-99 365.5 230 77.8
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 4.0e-99 365.2 229 77.3
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.6e-98 362.5 227 78.0
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 3.4e-98 362.1 233 74.2
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 9.9e-98 360.5 230 76.1
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.3e-97 360.1 229 78.6
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 1.3e-97 360.1 228 75.4
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.9e-97 359.0 234 74.4
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 3.8e-97 358.6 228 74.6
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 4.9e-97 358.2 228 74.6
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.9e-96 356.3 230 74.8
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 7.1e-96 354.4 231 73.2
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 9.3e-96 354.0 230 74.8
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 1.2e-95 353.6 234 74.4
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.5e-95 352.1 228 73.2
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 6.0e-95 351.3 233 73.4
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 6.0e-95 351.3 234 72.6
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 6.0e-95 351.3 230 73.9
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 7.8e-95 350.9 234 73.9
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 1.3e-94 350.1 229 73.4
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 1.3e-94 350.1 233 72.1
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 1.7e-94 349.7 234 72.2
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 3.0e-94 349.0 231 74.0
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 3.9e-94 348.6 230 73.5
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 3.9e-94 348.6 289 62.3
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 5.1e-94 348.2 230 71.7
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 5.1e-94 348.2 230 71.3
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 6.6e-94 347.8 230 71.3
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 6.6e-94 347.8 230 71.3
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 8.7e-94 347.4 230 71.3
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.9e-93 346.3 230 70.9
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.9e-93 346.3 228 72.8
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 3.3e-93 345.5 224 75.0
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 4.3e-93 345.1 228 74.6
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.3e-92 343.6 229 71.6
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.6e-92 343.2 234 69.2
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.1e-92 342.8 236 69.1
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 2.8e-92 342.4 230 72.6
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.8e-92 342.4 234 69.2
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 2.8e-92 342.4 228 74.1
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 4.8e-92 341.7 230 70.4
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 4.8e-92 341.7 258 66.3
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.1e-91 340.5 229 70.7
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.1e-91 340.5 229 72.1
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 1.4e-91 340.1 229 71.2
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 6.9e-91 337.8 228 71.1
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 9.0e-91 337.4 230 70.4
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.0e-90 336.3 230 70.4
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 5.8e-90 334.7 230 70.0
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.3e-89 333.6 232 69.8
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 1.3e-89 333.6 231 68.4
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.7e-89 333.2 240 68.8
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 3.8e-89 332.0 230 71.7
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 8.4e-89 330.9 230 71.7
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.9e-88 329.7 231 68.8
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 4.2e-88 328.6 257 64.6
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 9.3e-88 327.4 228 69.7
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 1.6e-87 326.6 229 66.8
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 4.6e-87 325.1 230 69.6
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 2.3e-86 322.8 216 71.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.9e-86 322.0 203 77.8
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.7e-86 321.2 225 71.6
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 4.8e-84 315.1 237 63.7
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 9.0e-83 310.8 217 71.9
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 3.4e-82 308.9 230 67.0
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 4.9e-81 305.1 205 69.8
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 5.1e-78 295.0 230 60.9
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.7e-78 294.7 267 59.6
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 2.5e-77 292.7 203 70.9
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 3.3e-77 292.4 205 71.2
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 1.7e-73 280.0 184 73.4
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 5.5e-72 275.0 183 70.5
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.5e-69 266.9 212 68.4
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 1.2e-66 257.3 227 57.3
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 4.5e-66 255.4 169 72.8
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 5.1e-62 241.9 148 75.7
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 4.3e-61 238.8 232 52.2
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 7.4e-61 238.0 131 84.7
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.8e-60 235.3 228 52.6
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 5.0e-57 225.3 231 50.2
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 6.5e-57 224.9 233 50.2
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 1.0e-54 217.6 231 49.8
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.0e-49 201.1 123 78.9
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.8e-46 190.3 144 71.5
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 5.2e-46 188.7 224 46.9
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.2e-41 173.3 115 76.5
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 7.2e-32 141.7 170 46.5
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 7.0e-27 125.2 99 61.6
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 3.5e-26 122.9 99 61.6
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 8.9e-22 108.2 339 28.9
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 9.8e-21 104.8 214 35.5
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 5.6e-16 89.0 103 50.5
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.6e-15 87.4 102 50.0
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.1e-11 72.8 48 70.8
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 5.0e-09 65.9 58 53.4
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 1.1e-08 64.7 226 23.5
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 1.5e-08 64.3 58 50.0
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 1.5e-08 64.3 58 50.0
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 2.5e-08 63.5 34 85.3
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 2.5e-08 63.5 50 56.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.6e-07 60.8 46 60.9


User provided reference genes

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