Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1105200 Malus domestica HOM05D001588 ORTHO05D002975 4.8e-41 170.6 81 100.0
MD11G1153900 Malus domestica HOM05D001588 ORTHO05D002975 5.4e-16 87.4 52 76.9
FAN11G1297 Fragaria x ananassa HOM05D001588 ORTHO05D002975 3.6e-12 74.7 68 58.8
QL07p041178 Quercus lobata HOM05D001588 ORTHO05D002975 6.2e-12 73.9 65 61.5
Atru.chr8.1676 Acer truncatum HOM05D001588 ORTHO05D002975 1.8e-11 72.4 68 57.4
MD12G1101800 Malus domestica HOM05D001588 ORTHO05D002975 1.8e-11 72.4 68 55.9
Prupe.7G122000 Prunus persica HOM05D001588 ORTHO05D002975 1.8e-11 72.4 65 58.5
RcHm_v2.0_Chr5g0055901 Rosa chinensis HOM05D001588 ORTHO05D002975 2.3e-11 72.0 68 57.4
Dinv35843 Davidia involucrata HOM05D001588 ORTHO05D002975 3.1e-11 71.6 52 67.3
Lalb_Chr09g0325431 Lupinus albus HOM05D001588 ORTHO05D002975 5.2e-11 70.9 52 63.5
Gohir.A09G143000 Gossypium hirsutum HOM05D001588 ORTHO05D002975 6.8e-11 70.5 52 65.4
Gohir.D09G139200 Gossypium hirsutum HOM05D001588 ORTHO05D002975 6.8e-11 70.5 52 65.4
Gorai.006G159700 Gossypium raimondii HOM05D001588 ORTHO05D002975 6.8e-11 70.5 52 65.4
Ciclev10011319m.g Citrus clementina HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 65.4
COL.COLO4_22266 Corchorus olitorius HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 65.4
RcHm_v2.0_Chr3g0471501 Rosa chinensis HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 63.5
Sed0001057 Sechium edule HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 65.4
TAR623G1568 Trochodendron aralioides HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 65.4
TAR633G2163 Trochodendron aralioides HOM05D001588 ORTHO05D002975 8.9e-11 70.1 52 65.4
Actinidia31303 Actinidia chinensis HOM05D001588 ORTHO05D002975 1.2e-10 69.7 52 65.4
Lj1g0002909 Lotus japonicus HOM05D001588 ORTHO05D002975 1.2e-10 69.7 52 63.5
arahy.Tifrunner.gnm1.ann1.I2K1QZ Arachis hypogaea HOM05D001588 ORTHO05D002975 1.5e-10 69.3 52 63.5
CiPaw.09G006100 Carya illinoinensis HOM05D001588 ORTHO05D002975 1.5e-10 69.3 52 61.5
FvH4_6g17350 Fragaria vesca HOM05D001588 ORTHO05D002975 1.5e-10 69.3 65 56.9
FAN05G2152 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.5e-10 69.3 65 56.9
FAN05G5823 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.5e-10 69.3 65 56.9
FAN09G2648 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.5e-10 69.3 65 56.9
FAN14G1509 Fragaria x ananassa HOM05D001588 ORTHO05D002975 1.5e-10 69.3 65 56.9
Lj3A1008G68 Lonicera japonica HOM05D001588 ORTHO05D002975 1.5e-10 69.3 52 63.5
PGR142G1536 Punica granatum HOM05D001588 ORTHO05D002975 1.5e-10 69.3 52 63.5
arahy.Tifrunner.gnm1.ann1.1YXT4F Arachis hypogaea HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 61.5
arahy.Tifrunner.gnm1.ann1.32P3WE Arachis hypogaea HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 61.5
A05p39000 Brassica napus HOM05D001588 ORTHO05D002975 2.0e-10 68.9 49 67.3
C05p58030 Brassica napus HOM05D001588 ORTHO05D002975 2.0e-10 68.9 49 67.3
BolC5t34459H Brassica oleracea HOM05D001588 ORTHO05D002975 2.0e-10 68.9 49 67.3
BraA05t22691Z Brassica rapa HOM05D001588 ORTHO05D002975 2.0e-10 68.9 49 67.3
FAN05G0064 Fragaria x ananassa HOM05D001588 ORTHO05D002975 2.0e-10 68.9 65 56.9
Glyma.10G064000 Glycine max HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 61.5
Gohir.D04G106300 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 63.5
Hma1.2p1_1578F.1_g291790 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 2.0e-10 68.9 68 57.4
Phvul.007G225400 Phaseolus vulgaris HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 61.5
Rhsim04G0137800 Rhododendron simsii HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 63.5
RhsimUnG0231900 Rhododendron simsii HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 63.5
RcHm_v2.0_Chr4g0394271 Rosa chinensis HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 63.5
VMungo0720G1728 Vigna mungo HOM05D001588 ORTHO05D002975 2.0e-10 68.9 52 61.5
Cpa.g.sc5.116 Carica papaya HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 61.5
ClCG04G009610 Citrullus lanatus HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 63.5
Duzib106G0304 Durio zibethinus HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 63.5
Gohir.A04G067614 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 63.5
Gorai.009G410200 Gossypium raimondii HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 63.5
Hund29355 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 65.4
Hund29356 Selenicereus undatus HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 65.4
Thecc.05G076800 Theobroma cacao HOM05D001588 ORTHO05D002975 2.6e-10 68.6 52 63.5
Aa31LG3G2580 Aethionema arabicum HOM05D001588 ORTHO05D002975 3.4e-10 68.2 52 63.5
Haze_19500 Corylus avellana HOM05D001588 ORTHO05D001212 3.4e-10 68.2 68 52.9
Manes.09G047609 Manihot esculenta HOM05D001588 ORTHO05D002975 3.4e-10 68.2 52 63.5
Sabra06G0093100 Salix brachista HOM05D001588 ORTHO05D002975 3.4e-10 68.2 52 59.6
Sed0011255 Sechium edule HOM05D001588 ORTHO05D002975 3.4e-10 68.2 52 63.5
CANSAT80G1765 Cannabis sativa HOM05D001588 ORTHO05D002975 4.4e-10 67.8 52 63.5
Oeu031870.1 Olea europaea HOM05D001588 ORTHO05D002975 4.4e-10 67.8 52 63.5
vmacro11209 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 4.4e-10 67.8 52 61.5
GSVIVG01033731001 Vitis vinifera HOM05D001588 ORTHO05D002975 4.4e-10 67.8 52 63.5
CSS0010158 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 63.5
CSS0025803 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 63.5
AUR62037925 Chenopodium quinoa HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 63.5
AUR62040179 Chenopodium quinoa HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 63.5
AUR62040181 Chenopodium quinoa HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 63.5
Lalb_Chr05g0215691 Lupinus albus HOM05D001588 ORTHO05D002975 5.8e-10 67.4 52 61.5
Ca_11567_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 7.5e-10 67.0 52 59.6
FAN02G0909 Fragaria x ananassa HOM05D001588 ORTHO05D002975 7.5e-10 67.0 65 55.4
Glyma.13G148600 Glycine max HOM05D001588 ORTHO05D002975 7.5e-10 67.0 52 59.6
vmacro08808 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 7.5e-10 67.0 52 61.5
Carub.0003s0915 Capsella rubella HOM05D001588 ORTHO05D002975 9.9e-10 66.6 52 61.5
DCAR_020796 Daucus carota HOM05D001588 ORTHO05D002975 9.9e-10 66.6 52 61.5
Thhalv10020316m.g Eutrema salsugineum HOM05D001588 ORTHO05D002975 9.9e-10 66.6 52 61.5
BcaB03g11575 Brassica carinata HOM05D001588 ORTHO05D002975 1.3e-09 66.2 49 65.3
Sc20g0005880 Simmondsia chinensis HOM05D001588 ORTHO05D002975 1.3e-09 66.2 52 61.5
arahy.Tifrunner.gnm1.ann1.C5R797 Arachis hypogaea HOM05D001588 ORTHO05D002975 1.7e-09 65.9 52 59.6
BcaB04g21231 Brassica carinata HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
BcaC09g48118 Brassica carinata HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
A01p42070 Brassica napus HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
A03p35710 Brassica napus HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
BolC1t05423H Brassica oleracea HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
BraA01t04276Z Brassica rapa HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
BraA03t12745Z Brassica rapa HOM05D001588 ORTHO05D002975 1.7e-09 65.9 49 63.3
Manes.08G017400 Manihot esculenta HOM05D001588 ORTHO05D002975 1.7e-09 65.9 52 61.5
Oeu040559.1 Olea europaea HOM05D001588 ORTHO05D002975 1.7e-09 65.9 52 61.5
MSTRG.19212 Avicennia marina HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
MSTRG.26663 Avicennia marina HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
CAN.G541.22 Capsicum annuum HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
CARHR084550 Cardamine hirsuta HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
Cfa016497 Carpinus fangiana HOM05D001588 ORTHO05D002975 2.2e-09 65.5 68 50.0
Ca_10489_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 59.6
HanXRQChr13g0400241 Helianthus annuus HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
SGA_v2.0_scaffold277G46714 Striga asiatica HOM05D001588 ORTHO05D002975 2.2e-09 65.5 52 61.5
BcaC01g04258 Brassica carinata HOM05D001588 ORTHO05D002975 2.9e-09 65.1 49 63.3
C03p43380 Brassica napus HOM05D001588 ORTHO05D002975 2.9e-09 65.1 49 63.3
BolC3t16609H Brassica oleracea HOM05D001588 ORTHO05D002975 2.9e-09 65.1 49 63.3
Migut.L01735 Erythranthe guttata HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 61.5
Lj5g0023234 Lotus japonicus HOM05D001588 ORTHO05D002975 2.9e-09 65.1 49 61.2
Nitab4.5_0000963g0020 Nicotiana tabacum HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 61.5
Peaxi162Scf00146g00320 Petunia axillaris HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 59.6
Solyc10g083760.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 59.6
Sopen10g033220 Solanum pennellii HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 59.6
PGSC0003DMG400028273 Solanum tuberosum HOM05D001588 ORTHO05D002975 2.9e-09 65.1 52 59.6
Potri.006G118400 Populus trichocarpa HOM05D001588 ORTHO05D002975 3.7e-09 64.7 52 57.7
TPR.G30344 Trifolium pratense HOM05D001588 ORTHO05D002975 4.9e-09 64.3 52 57.7
ATR0697G150 Amborella trichopoda HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 59.6
AL3G21380 Arabidopsis lyrata HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 57.7
AT3G10050 Arabidopsis thaliana HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 57.7
Eucgr.A01588 Eucalyptus grandis HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 57.7
Lsat_1_v5_gn_6_29060 Lactuca sativa HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 59.6
Nitab4.5_0000132g0410 Nicotiana tabacum HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 57.7
THA.LOC104823221 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 6.4e-09 63.9 52 57.7
Hma1.2p1_0564F.1_g179110 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 59.6
Nn6g35129 Nelumbo nucifera HOM05D001588 ORTHO05D002975 8.3e-09 63.5 56 53.6
PSO339G2383 Papaver somniferum HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 57.7
PSO801G0202 Papaver somniferum HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 57.7
Sp3g08360 Schrenkiella parvula HOM05D001588 ORTHO05D002975 8.3e-09 63.5 49 61.2
THA.LOC104816384 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 57.7
unitig_746.g26768 Utricularia gibba HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 59.6
unitig_899.g15214 Utricularia gibba HOM05D001588 ORTHO05D002975 8.3e-09 63.5 52 59.6
MELO3C024500.2 Cucumis melo HOM05D001588 ORTHO05D002975 1.1e-08 63.2 49 61.2
CsaV3_6G040240 Cucumis sativus L. HOM05D001588 ORTHO05D002975 1.1e-08 63.2 49 61.2
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 1.1e-08 63.2 52 59.6
PSO339G2017 Papaver somniferum HOM05D001588 ORTHO05D002975 1.1e-08 63.2 52 57.7
Peaxi162Scf00110g00912 Petunia axillaris HOM05D001588 ORTHO05D002975 1.1e-08 63.2 52 57.7
Psat6g077520 Pisum sativum HOM05D001588 ORTHO05D002975 1.1e-08 63.2 52 57.7
SGA_v2.0_scaffold75G24813 Striga asiatica HOM05D001588 ORTHO05D002975 1.1e-08 63.2 59 54.2
CDE02G4744 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 1.4e-08 62.8 52 57.7
PSO063G4077 Papaver somniferum HOM05D001588 ORTHO05D002975 1.4e-08 62.8 52 57.7
Peaxi162Scf00163g00215 Petunia axillaris HOM05D001588 ORTHO05D002975 1.4e-08 62.8 52 59.6
Ca_11602_v3 Cicer arietinum L. HOM05D001588 ORTHO05D002975 1.9e-08 62.4 52 57.7
DCAR_017643 Daucus carota HOM05D001588 ORTHO05D002975 1.9e-08 62.4 49 59.2
ECA233G3154 Erigeron canadensis HOM05D001588 ORTHO05D002975 1.9e-08 62.4 52 57.7
ECA248G3418 Erigeron canadensis HOM05D001588 ORTHO05D002975 1.9e-08 62.4 52 57.7
Medtr1g061800 Medicago truncatula HOM05D001588 ORTHO05D002975 1.9e-08 62.4 52 57.7
Ah.15g091270 Amaranthus hybridus HOM05D001588 ORTHO05D002975 2.4e-08 62.0 52 57.7
Migut.J00482 Erythranthe guttata HOM05D001588 ORTHO05D002975 3.2e-08 61.6 52 57.7
Ah.08g211180 Amaranthus hybridus HOM05D001588 ORTHO05D002975 4.1e-08 61.2 52 53.8
CDE02G3443 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 4.1e-08 61.2 52 55.8
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 4.1e-08 61.2 49 59.2
Zm00001eb216240 Zea mays HOM05D001588 ORTHO05D002975 4.1e-08 61.2 52 57.7
Mapoly0148s0008 Marchantia polymorpha HOM05D001588 ORTHO05D002975 5.4e-08 60.8 52 55.8
TWI53G0599 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 5.4e-08 60.8 52 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3339 Anthoceros agrestis HOM05D001588 ORTHO05D002975 7.1e-08 60.5 49 55.1
HanXRQChr01g0028181 Helianthus annuus HOM05D001588 ORTHO05D002975 7.1e-08 60.5 52 57.7
Nitab4.5_0000132g0130 Nicotiana tabacum HOM05D001588 ORTHO05D002975 9.2e-08 60.1 44 63.6
Os03g0713000 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D002975 9.2e-08 60.1 52 57.7
Solyc10g083540.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 9.2e-08 60.1 52 57.7
Sopen10g033010 Solanum pennellii HOM05D001588 ORTHO05D002975 9.2e-08 60.1 52 57.7
PGSC0003DMG400047128 Solanum tuberosum HOM05D001588 ORTHO05D002975 9.2e-08 60.1 52 57.7
HPP92_017794 Vanilla planifolia HOM05D001588 ORTHO05D002975 9.2e-08 60.1 52 55.8
CsaV3_6G040200 Cucumis sativus L. HOM05D001588 ORTHO05D002975 1.2e-07 59.7 49 59.2
Zm00001eb055020 Zea mays HOM05D001588 ORTHO05D002975 1.2e-07 59.7 52 55.8
Pp3c9_5670 Physcomitrium patens HOM05D001588 ORTHO05D002975 1.6e-07 59.3 52 55.8
TWI77G0360 Tripterygium wilfordii HOM05D001588 ORTHO05D002975 1.6e-07 59.3 52 53.8
Lsat_1_v5_gn_1_51101 Lactuca sativa HOM05D001588 ORTHO05D002975 2.1e-07 58.9 52 55.8
Atru.chr3.3418 Acer truncatum HOM05D001588 ORTHO05D002975 2.7e-07 58.5 49 61.2
HanXRQChr11g0350771 Helianthus annuus HOM05D001588 ORTHO05D002975 2.7e-07 58.5 52 55.8
SEGI_35712 Sequoiadendron giganteum HOM05D001588 ORTHO05D002975 3.5e-07 58.2 46 58.7
Haze_23471 Corylus avellana HOM05D001588 ORTHO05D002975 6.0e-07 57.4 47 66.0
Aqoxy2G01530 Aquilegia oxysepala HOM05D001588 ORTHO05D002975 7.8e-07 57.0 57 54.4
SMO367G0954 Selaginella moellendorffii HOM05D001588 ORTHO05D002975 1.0e-06 56.6 52 53.8
HPP92_018834 Vanilla planifolia HOM05D001588 ORTHO05D002975 1.3e-06 56.2 52 51.9
Cfa010105 Carpinus fangiana HOM05D001588 ORTHO05D002975 1.7e-06 55.8 41 63.4
PGSC0003DMG400017604 Solanum tuberosum HOM05D001588 ORTHO05D002975 6.6e-06 53.9 52 51.9
C08p29030 Brassica napus HOM05D001588 ORTHO05D002975 8.6e-06 53.5 53 54.7
Solyc10g086160.1 Solanum lycopersicum HOM05D001588 ORTHO05D002975 8.6e-06 53.5 53 49.1


User provided reference genes

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