Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.4e-115 418.3 204 100.0
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.7e-96 355.5 208 84.6
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.3e-87 326.6 201 80.1
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.6e-80 303.1 194 77.3
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 3.0e-79 298.9 198 75.3
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.1e-78 297.0 198 74.2
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 8.1e-77 290.8 201 72.1
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 4.6e-72 275.0 197 70.6
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.5e-70 270.0 269 55.8
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 9.6e-70 267.3 198 69.2
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.8e-69 265.8 194 68.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.6e-69 265.4 204 64.7
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 8.1e-69 264.2 197 67.0
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.8e-68 263.1 215 64.2
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.4e-68 262.7 192 70.3
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 6.9e-68 261.2 191 69.1
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.2e-67 260.4 200 66.5
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.5e-67 260.0 195 65.1
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.0e-67 259.6 202 64.9
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.6e-67 259.2 198 66.2
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 3.4e-67 258.8 197 66.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 4.4e-67 258.5 199 64.8
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 9.9e-67 257.3 197 66.0
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.3e-66 256.9 196 65.8
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.3e-66 256.9 195 65.1
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.7e-66 256.5 197 66.0
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.7e-66 256.5 197 64.5
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 2.9e-66 255.8 200 64.0
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.9e-66 255.8 198 65.7
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.9e-66 255.8 193 66.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.8e-66 255.4 197 64.5
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 4.9e-66 255.0 193 64.8
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 4.9e-66 255.0 199 64.8
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 6.4e-66 254.6 197 65.0
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 1.4e-65 253.4 191 64.4
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.4e-65 253.4 192 67.2
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.4e-65 252.7 188 64.4
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.4e-65 252.7 188 64.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.4e-65 252.7 195 63.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.1e-65 251.1 198 64.6
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.1e-65 251.1 188 63.8
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 7.1e-65 251.1 195 62.6
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 9.3e-65 250.8 196 63.8
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 9.3e-65 250.8 198 65.7
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 9.3e-65 250.8 212 60.8
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.6e-64 250.0 196 63.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.7e-64 249.2 195 61.5
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 6.0e-64 248.1 195 64.1
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 6.0e-64 248.1 196 62.8
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 7.9e-64 247.7 196 63.3
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.0e-63 245.7 189 65.1
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 3.9e-63 245.4 215 59.5
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 6.6e-63 244.6 209 58.9
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.1e-62 243.8 196 62.8
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.1e-62 243.8 197 62.9
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.5e-62 243.4 198 63.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.9e-62 243.0 195 63.6
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.5e-62 242.7 190 64.2
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.6e-62 241.5 201 59.7
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 9.6e-62 240.7 190 61.6
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 9.6e-62 240.7 122 90.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 3.6e-61 238.8 208 59.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 8.1e-61 237.7 196 61.7
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.8e-60 236.5 195 62.1
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.3e-60 235.0 195 64.1
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.2e-59 233.8 196 61.2
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.5e-59 233.4 125 83.2
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.4e-59 232.3 198 60.1
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.8e-59 231.5 221 56.6
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 7.6e-59 231.1 125 83.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 9.9e-59 230.7 198 58.1
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.9e-59 230.7 194 60.3
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.3e-58 230.3 191 58.6
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.7e-58 229.9 123 83.7
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.9e-58 229.2 221 56.6
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 6.4e-58 228.0 193 60.6
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 8.4e-58 227.6 195 60.0
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.4e-57 226.9 204 60.8
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.9e-57 226.5 129 79.8
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 7.1e-57 224.6 193 58.0
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.2e-56 223.8 192 55.7
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.1e-56 223.0 254 49.2
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.1e-56 223.0 180 65.0
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.7e-56 222.6 191 56.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.5e-56 222.2 206 58.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 3.5e-56 222.2 123 80.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 7.9e-56 221.1 125 78.4
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.3e-54 215.3 192 59.4
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 6.2e-53 211.5 123 73.2
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.4e-52 209.5 151 66.2
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 3.1e-52 209.1 137 75.9
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.8e-51 204.9 197 51.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.0e-50 204.1 197 51.3
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.0e-50 204.1 126 67.5
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 3.2e-49 199.1 195 52.8
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.8e-47 193.4 253 45.8
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 3.0e-47 192.6 163 62.0
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.1e-46 190.7 114 72.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.5e-46 190.3 114 73.7
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 5.7e-46 188.3 226 43.4
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 4.8e-45 185.3 165 58.2
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.4e-44 183.0 98 83.7
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 9.0e-44 181.0 155 54.2
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 7.6e-43 177.9 165 54.5
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 6.5e-42 174.9 197 49.2
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 6.1e-40 168.3 151 50.3
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 3.9e-39 165.6 178 53.4
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 5.1e-39 165.2 111 64.9
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.1e-38 164.1 109 59.6
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.9e-38 163.3 126 61.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.3e-37 160.6 135 64.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.2e-35 154.1 159 52.2
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 3.4e-35 152.5 201 46.8
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.2e-34 149.8 136 58.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 5.5e-33 145.2 268 38.4
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.0e-31 141.0 126 49.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.8e-28 130.2 63 90.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 6.9e-28 128.3 135 41.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.2e-27 127.5 157 48.4
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.0e-26 124.4 99 59.6
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 5.0e-26 122.1 143 47.6
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 6.5e-26 121.7 100 46.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 3.2e-25 119.4 122 44.3
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 6.1e-24 115.2 96 51.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.9e-24 114.8 58 86.2
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 8.8e-23 111.3 63 74.6
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 9.7e-22 107.8 95 46.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 3.5e-19 99.4 114 53.5
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 7.7e-19 98.2 122 48.4
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 3.8e-18 95.9 104 44.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.5e-17 93.2 93 39.8
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 6.3e-13 78.6 116 40.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 3.1e-12 76.3 40 80.0
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.3e-12 75.5 115 40.0
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 7.7e-11 71.6 96 46.9
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 3.8e-10 69.3 47 61.7
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 6.5e-10 68.6 114 41.2
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.5e-09 67.4 34 82.4
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.5e-09 67.4 34 82.4
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 7.5e-06 55.1 155 30.3


User provided reference genes

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