Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 0.0e+00 1097.0 572 100.0
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 4.4e-298 1027.3 572 91.4
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.0e-282 975.3 569 86.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 4.6e-255 884.4 572 81.3
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.2e-242 843.2 572 79.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.8e-238 829.3 586 77.5
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 4.8e-236 821.2 574 72.3
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 1.4e-235 819.7 564 75.4
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.0e-234 815.8 573 71.4
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 5.9e-234 814.3 572 72.2
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.0e-233 813.5 572 72.0
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.2e-233 812.4 589 72.5
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.8e-233 811.6 585 76.8
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.5e-232 808.9 570 71.4
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 5.5e-232 807.7 567 72.0
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.2e-231 806.6 570 71.6
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.6e-231 806.2 570 72.5
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.7e-231 805.4 570 71.1
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 8.0e-231 803.9 570 71.4
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 6.7e-230 800.8 563 72.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.0e-229 799.3 576 72.7
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.6e-229 798.9 574 72.5
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.6e-229 798.9 573 73.3
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 4.4e-229 798.1 563 72.8
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.7e-228 796.2 569 69.1
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.8e-227 792.7 563 71.2
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 2.0e-226 789.3 574 72.8
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 7.7e-226 787.3 571 69.2
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.3e-225 786.6 572 69.8
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.7e-225 786.2 565 71.9
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.9e-225 785.4 571 69.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 4.2e-224 781.6 575 67.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 9.4e-224 780.4 573 68.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 3.6e-223 778.5 575 66.4
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 5.2e-222 774.6 567 71.6
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.4e-221 771.5 575 67.5
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 9.8e-221 770.4 554 69.0
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.8e-220 768.8 559 70.1
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 4.8e-220 768.1 543 72.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.1e-219 766.9 535 73.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.1e-219 766.9 521 72.7
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.2e-218 763.5 571 68.0
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.5e-218 761.9 553 71.2
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.3e-217 760.0 555 68.6
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.7e-217 759.6 539 70.9
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 2.3e-217 759.2 507 74.8
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.1e-216 756.9 554 69.0
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.9e-216 756.1 572 69.1
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 3.3e-216 755.4 450 81.8
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 5.5e-216 754.6 550 68.5
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 2.1e-215 752.7 543 71.8
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 6.1e-215 751.1 517 71.6
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 8.0e-215 750.7 549 69.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 8.0e-215 750.7 516 72.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.0e-214 750.4 559 70.3
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.3e-214 749.2 553 68.2
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.2e-214 748.0 536 71.1
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.2e-214 748.0 570 67.7
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 6.8e-214 747.7 456 79.6
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-213 746.9 555 67.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.5e-213 746.5 521 71.6
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 1.5e-213 746.5 571 68.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 2.6e-213 745.7 529 73.0
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 3.4e-213 745.3 519 72.3
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 4.4e-213 745.0 455 77.4
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.7e-212 743.0 552 70.3
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.2e-212 742.7 511 72.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.2e-212 742.7 460 78.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.8e-212 742.3 513 71.5
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.7e-212 741.9 519 71.9
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 6.3e-212 741.1 511 72.6
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 6.3e-212 741.1 511 72.6
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 8.3e-212 740.7 502 74.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.4e-211 740.0 517 71.6
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.8e-211 739.6 546 68.7
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 5.4e-211 738.0 545 68.3
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-210 736.9 457 79.2
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.5e-210 735.3 560 67.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 3.5e-210 735.3 479 73.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 3.5e-210 735.3 455 77.8
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.3e-209 733.4 443 80.4
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 2.9e-209 732.3 460 77.0
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.8e-209 731.9 526 71.9
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 8.0e-207 724.2 424 82.3
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.4e-206 723.4 457 77.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 5.2e-206 721.5 445 78.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 8.9e-206 720.7 634 60.9
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 7.5e-205 717.6 461 75.5
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.7e-204 716.5 422 81.0
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.2e-204 716.1 521 68.7
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.9e-204 715.7 457 76.8
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 4.9e-204 714.9 454 76.9
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 3.2e-203 712.2 431 78.7
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.6e-202 709.9 461 75.7
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 9.5e-200 700.7 452 76.1
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 9.8e-197 690.6 589 63.3
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 4.1e-187 658.7 574 63.9
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 6.4e-180 634.8 421 73.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.4e-179 633.6 372 82.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 6.0e-178 628.2 468 65.8
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.3e-164 583.9 386 76.2
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.7e-156 557.0 452 61.7
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 9.6e-152 541.2 441 60.1
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.2e-149 534.3 429 65.5
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 3.0e-145 519.6 440 62.5
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.6e-143 513.8 436 58.7
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 2.3e-137 493.4 436 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.6e-114 417.5 459 48.8
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.1e-110 404.8 521 46.1
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.7e-108 397.5 481 46.6
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 8.5e-108 395.2 450 48.9
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.2e-107 392.9 453 48.6
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.2e-106 391.3 453 48.1
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 2.7e-101 373.6 478 44.1
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-99 368.2 567 43.0
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 4.2e-99 366.3 523 43.8
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 7.2e-99 365.5 255 71.8
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.0e-93 347.4 557 42.9
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 8.0e-82 308.9 498 38.8
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 6.4e-79 299.3 176 78.4
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 5.8e-72 276.2 169 75.7
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.2e-53 215.3 210 60.5
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 3.1e-49 200.7 162 64.8
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 7.6e-40 169.5 138 63.8
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 7.6e-40 169.5 131 65.6
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 6.9e-33 146.4 86 82.6
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 6.7e-28 129.8 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 6.9e-25 119.8 141 45.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 7.2e-22 109.8 105 58.1
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.0e-19 101.7 58 84.5
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.6e-13 80.9 141 47.5
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.1e-12 77.0 118 44.1
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.8e-10 71.2 118 41.5
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 5.9e-08 63.5 38 78.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 2.2e-07 61.6 152 36.8


User provided reference genes

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