Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 8.6e-238 826.6 430 100.0
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 9.0e-195 683.7 426 83.6
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 3.1e-179 632.1 428 75.9
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.7e-177 626.3 429 75.5
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.9e-176 622.9 429 75.1
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.7e-167 591.7 409 74.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 4.0e-166 588.6 427 71.9
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.8e-161 572.0 429 71.3
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 4.7e-159 565.1 428 69.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 4.8e-156 555.1 424 68.2
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 7.0e-155 551.2 429 67.6
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.2e-154 550.4 426 67.1
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 2.3e-153 546.2 428 66.6
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.8e-153 545.4 428 67.8
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 5.5e-152 541.6 401 69.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 6.1e-151 538.1 428 67.1
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.0e-150 537.3 426 64.1
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.5e-149 533.5 400 66.5
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 3.4e-149 532.3 395 69.4
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 9.2e-147 524.2 409 67.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 3.5e-146 522.3 389 67.9
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 3.5e-146 522.3 391 67.3
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 3.5e-146 522.3 428 64.3
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 5.6e-144 515.0 424 62.5
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 6.1e-143 511.5 400 66.0
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 6.1e-143 511.5 426 61.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 8.0e-143 511.1 402 63.9
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 5.2e-142 508.4 393 66.7
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 8.9e-142 507.7 387 66.7
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 3.4e-141 505.8 392 67.1
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 3.7e-140 502.3 393 65.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 8.3e-140 501.1 394 66.2
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.6e-138 496.9 393 65.6
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 2.0e-138 496.5 425 61.9
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 2.0e-138 496.5 379 67.8
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.6e-138 495.4 384 65.6
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.0e-137 494.2 424 60.6
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.3e-137 493.8 384 65.4
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 2.3e-137 493.0 460 59.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.9e-136 490.0 391 65.5
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 6.2e-135 485.0 430 60.2
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.5e-133 480.3 394 63.5
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 4.4e-133 478.8 386 63.0
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 7.5e-133 478.0 386 63.0
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 9.8e-133 477.6 371 66.8
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 8.3e-132 474.6 386 62.7
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 2.4e-131 473.0 386 62.7
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.4e-131 473.0 449 59.5
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 4.1e-131 472.2 429 57.8
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.6e-130 470.3 358 67.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.0e-130 468.4 394 61.2
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 7.8e-130 468.0 429 60.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.7e-129 466.8 394 61.4
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.7e-129 466.8 388 61.9
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.0e-129 466.1 394 61.9
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.1e-129 465.3 385 62.6
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.9e-128 463.4 434 57.8
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 4.4e-125 452.2 444 56.1
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 7.5e-125 451.4 385 59.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 9.9e-125 451.1 405 60.5
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.7e-124 449.1 385 59.2
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 3.2e-123 446.0 384 58.1
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 5.4e-123 445.3 395 58.2
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 9.2e-123 444.5 383 62.7
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.0e-121 441.0 426 55.9
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.8e-118 430.3 384 56.5
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 3.1e-118 429.5 420 56.2
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.3e-116 424.1 355 63.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.9e-116 422.9 331 67.4
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.0e-114 415.2 384 57.6
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.3e-113 414.1 387 57.1
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 9.6e-112 407.9 387 57.1
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 9.6e-112 407.9 388 56.2
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 3.6e-111 406.0 387 56.3
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.4e-110 404.1 387 57.4
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.8e-110 403.7 431 51.7
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 3.1e-110 402.9 387 55.8
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.2e-109 401.0 323 63.2
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.9e-107 393.7 340 60.9
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.4e-107 393.3 340 60.9
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 4.2e-107 392.5 393 54.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.6e-106 389.0 386 54.4
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.6e-106 389.0 396 55.1
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.7e-105 387.1 396 55.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.0e-105 386.3 385 57.4
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 5.1e-105 385.6 396 55.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 5.1e-105 385.6 396 55.3
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.5e-104 383.3 399 54.4
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 5.6e-104 382.1 396 54.5
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 6.2e-103 378.6 396 54.5
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.4e-102 377.5 376 53.7
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.6e-101 373.2 385 52.2
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 7.6e-101 371.7 425 49.2
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.8e-100 369.4 405 53.8
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 8.4e-100 368.2 287 66.2
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.8e-95 353.2 418 50.5
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 4.5e-93 345.9 409 48.2
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.5e-88 330.9 334 56.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.3e-86 322.4 307 57.7
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 7.9e-82 308.5 380 48.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 3.3e-80 303.1 408 44.6
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.0e-76 291.6 311 52.1
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 4.6e-74 282.7 318 48.7
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.1e-67 261.5 352 44.3
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 7.2e-67 258.8 426 39.9
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 6.3e-63 245.7 362 42.0
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.7e-61 238.8 251 52.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 6.1e-58 229.2 396 37.9
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 7.0e-54 215.7 333 39.9
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 2.2e-47 194.1 188 55.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.2e-43 179.9 178 56.2
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.2e-43 179.1 196 51.5
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.5e-40 169.1 149 59.1
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 4.9e-39 166.4 374 33.7
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 5.4e-38 162.9 176 54.5
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 5.4e-38 162.9 176 54.5
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.5e-35 152.9 345 31.9
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.1e-34 151.0 393 31.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 8.9e-33 145.6 162 51.2
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.5e-32 144.8 356 30.3
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.0e-32 144.4 110 61.8
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.4e-32 143.3 73 91.8
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.7e-29 134.0 109 67.0
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.3e-28 131.0 241 37.8
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-25 122.1 89 69.7
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.2e-24 118.6 88 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.7e-23 114.8 123 44.7
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.7e-23 113.6 103 62.1
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.0e-21 107.8 117 52.1
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.9e-19 101.3 109 53.2
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.9e-14 84.7 65 67.7
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.9e-14 84.7 65 67.7
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 3.4e-08 63.9 256 27.3
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 2.2e-07 61.2 68 50.0
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 2.2e-07 61.2 42 76.2
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 2.9e-07 60.8 68 50.0
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 4.1e-06 57.0 50 60.0


User provided reference genes

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