Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.0e-104 383.6 223 100.0
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 9.4e-103 377.1 223 98.2
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.5e-100 369.8 223 96.9
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 94.6
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 92.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 9.4e-95 350.5 223 93.3
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 9.4e-95 350.5 223 91.5
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.1e-94 349.4 223 92.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.1e-94 349.4 223 92.4
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 2.7e-94 349.0 223 92.4
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 92.8
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 91.9
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 91.0
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.7e-94 348.2 223 91.9
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 4.7e-94 348.2 225 91.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 4.7e-94 348.2 225 91.6
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 6.1e-94 347.8 223 92.4
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 6.1e-94 347.8 225 91.6
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 6.1e-94 347.8 223 91.9
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.0e-93 347.1 223 90.6
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.0e-93 345.5 223 90.6
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 4.0e-93 345.1 225 91.1
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 91.5
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 90.1
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 8.8e-93 344.0 222 91.0
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.1e-92 343.6 236 87.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.1e-92 343.6 223 91.5
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-92 343.2 224 90.6
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.5e-92 343.2 224 90.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 2.0e-92 342.8 222 92.3
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 4.4e-92 341.7 223 90.6
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.4e-92 341.7 224 90.2
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 5.7e-92 341.3 223 89.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 7.5e-92 340.9 223 91.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-91 340.1 229 88.6
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.7e-91 339.7 223 90.6
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.2e-91 339.3 222 90.5
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 89.7
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 89.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 3.7e-91 338.6 223 90.1
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.4e-90 336.7 223 89.2
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 87.8
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 88.6
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.4e-90 336.7 221 88.7
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 1.8e-90 336.3 227 88.1
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.8e-90 336.3 229 87.8
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 2.4e-90 335.9 223 89.7
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.1e-90 335.5 223 88.8
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 4.1e-90 335.1 229 87.3
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 5.3e-90 334.7 227 87.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 5.3e-90 334.7 223 90.1
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 9.1e-90 334.0 226 87.6
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 9.1e-90 334.0 229 88.2
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 9.1e-90 334.0 229 87.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 9.1e-90 334.0 229 87.8
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.1e-90 334.0 223 88.3
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.2e-89 333.6 230 87.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-89 333.6 225 88.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.6e-89 333.2 228 86.4
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.6e-89 333.2 223 88.3
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.0e-89 332.8 229 86.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.0e-89 332.8 232 87.9
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 4.5e-89 331.6 223 87.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 7.7e-89 330.9 223 89.2
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 7.7e-89 330.9 230 87.4
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 7.7e-89 330.9 230 87.4
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 7.7e-89 330.9 230 87.4
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-88 330.5 230 87.0
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.0e-88 330.5 223 87.4
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.3e-88 330.1 230 86.5
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.3e-88 330.1 230 86.5
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.3e-88 330.1 220 88.6
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.7e-88 329.7 228 87.7
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 2.9e-88 328.9 229 86.9
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 87.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.8e-88 328.6 225 87.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.5
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.5
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.8e-88 328.6 223 86.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 85.7
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 85.7
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 8.5e-88 327.4 233 85.8
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 8.5e-88 327.4 230 86.1
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.5e-87 326.6 225 86.7
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 85.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 86.5
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 86.5
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.5e-87 326.6 223 85.7
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.5e-87 326.6 222 87.4
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.5e-87 325.9 223 85.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 86.1
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 86.1
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 3.2e-87 325.5 229 86.5
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 85.7
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 85.2
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 85.7
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 85.2
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 85.7
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.2e-87 325.1 224 87.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.2e-87 325.1 224 87.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 4.2e-87 325.1 229 86.0
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 7.2e-87 324.3 223 85.2
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 7.2e-87 324.3 223 85.2
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.2e-86 323.6 226 85.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 85.2
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 85.2
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.6e-86 323.2 227 86.3
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.6e-86 322.0 228 84.2
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 4.7e-86 321.6 224 84.8
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 6.1e-86 321.2 223 86.5
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.0e-85 320.5 225 85.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 4.0e-85 318.5 228 82.9
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.0e-84 316.2 223 84.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 4.8e-83 311.6 227 83.7
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.3e-83 311.2 269 74.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 8.3e-83 310.8 202 89.1
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.4e-82 309.3 228 83.3
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 3.1e-82 308.9 189 94.7
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 7.0e-82 307.8 205 87.8
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.6e-81 306.6 209 88.5
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.3e-80 303.5 189 93.7
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.2e-80 302.8 227 82.8
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 6.5e-80 301.2 229 80.8
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.5e-80 300.8 198 89.4
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 1.1e-79 300.4 209 87.6
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.9e-79 299.7 198 88.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.9e-79 299.7 184 95.1
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.7e-78 295.8 281 61.9
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.6e-78 295.4 179 95.5
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 3.7e-75 285.4 201 86.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 9.2e-74 280.8 168 97.0
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.7e-73 279.3 180 88.9
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 4.5e-73 278.5 191 88.5
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-71 271.9 187 86.6
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.2e-70 270.4 215 77.7
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-70 270.0 223 73.5
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.6e-70 268.9 193 86.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.8e-69 266.5 197 84.3
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.3e-67 260.4 169 89.9
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.7e-67 260.0 220 68.2
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 4.1e-66 255.4 164 90.9
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.2e-65 253.8 211 74.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-63 247.3 180 81.7
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 6.2e-62 241.5 148 97.3
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.0e-61 238.8 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.4e-60 235.7 200 74.0
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.1e-58 230.7 178 80.3
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.2e-57 227.3 205 67.3
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.7e-57 226.1 196 66.3
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-57 225.3 238 60.1
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.3e-56 223.8 137 97.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.5e-55 220.3 156 74.4
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.6e-54 216.9 166 77.1
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 5.8e-52 208.4 191 73.8
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.3e-51 204.5 132 95.5
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.2e-50 202.6 111 88.3
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.0e-49 198.4 137 73.7
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 6.2e-46 188.3 151 67.5
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 6.4e-35 151.8 124 66.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.5e-33 146.0 127 61.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 3.4e-28 129.4 225 42.7
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.2e-27 126.7 202 43.1
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 2.4e-18 96.7 109 49.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.2e-18 96.3 47 97.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.0e-16 91.3 78 64.1
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.1e-07 61.2 60 53.3


User provided reference genes

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