Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.8e-85 318.2 164 100.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 6.9e-79 297.4 164 93.9
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 4.8e-72 274.6 164 84.1
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 5.0e-69 264.6 164 78.7
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 76.8
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 78.7
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 79.9
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 79.9
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 79.3
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 6.7e-66 254.2 164 75.6
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 6.7e-66 254.2 164 76.8
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 76.2
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 5.7e-65 251.1 164 75.0
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 76.2
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.7e-64 249.6 164 75.0
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.6
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.6
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.6
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 73.8
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 74.4
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 76.2
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 73.2
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 72.0
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 75.0
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 72.0
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 72.0
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.0
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 73.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 72.0
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 73.2
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 73.8
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 72.0
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 72.6
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 73.2
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 70.7
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 72.0
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 2.7e-62 242.3 166 72.3
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 73.2
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 72.6
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 72.6
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 72.0
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 72.0
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 72.6
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 72.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.9
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 70.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 73.8
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 73.2
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 72.0
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 5.9e-62 241.1 188 67.6
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 5.9e-62 241.1 166 71.1
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 72.6
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 70.7
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 73.2
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.0e-61 240.4 159 74.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.0e-61 240.4 162 72.8
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 72.6
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 72.0
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 72.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 68.9
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 70.7
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 72.6
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 71.3
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 72.6
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 72.0
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.9e-61 238.8 166 70.5
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 71.3
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 72.0
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 71.3
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 72.0
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 71.3
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 71.3
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 70.7
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 72.0
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 68.3
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 70.7
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 70.1
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 70.1
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 9.4e-60 233.8 159 71.1
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 72.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 67.1
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 69.5
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 71.3
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 3.6e-59 231.9 160 71.2
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 70.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 68.9
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 67.1
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 67.1
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 68.9
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 65.2
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 4.0e-58 228.4 173 67.1
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 5.2e-58 228.0 164 64.6
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 68.3
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 65.2
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 64.6
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 66.5
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.3e-56 223.4 193 61.1
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 3.7e-56 221.9 185 62.2
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.4e-55 219.2 191 59.7
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 9.1e-55 217.2 164 64.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 4.5e-54 214.9 164 62.8
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.3e-53 212.6 164 60.4
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.8e-53 211.8 170 64.7
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 3.3e-52 208.8 171 61.4
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 4.2e-52 208.4 164 61.6
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.9e-50 200.7 162 58.0
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 3.7e-48 195.3 164 55.5
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.1e-47 193.7 133 72.9
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.5e-46 188.7 170 57.1
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.5e-46 188.7 170 57.1
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.3e-44 181.8 169 59.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 4.3e-44 181.8 132 66.7
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 8.0e-43 177.6 164 57.3
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 2.0e-41 172.9 167 57.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 3.7e-40 168.7 221 45.2
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 6.4e-40 167.9 165 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 2.0e-38 162.9 168 48.2
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.3e-37 160.2 165 51.5
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 4.3e-36 155.2 117 65.8
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 4.7e-35 151.8 122 56.6
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.4e-34 150.2 98 77.6
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.9e-32 142.5 161 49.1
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 2.1e-30 136.3 97 68.0
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 2.1e-30 136.3 83 81.9
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 6.0e-30 134.8 82 81.7
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 1.3e-29 133.7 92 75.0
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.3e-29 133.7 91 76.9
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.6e-27 126.7 82 73.2
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 2.3e-26 122.9 84 73.8
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.9e-24 115.9 125 46.4
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.7e-21 106.7 98 59.2
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 3.0e-21 105.9 66 74.2
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.1e-18 97.4 82 56.1
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 2.4e-18 96.3 119 37.8
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 3.4e-17 92.4 69 60.9
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 7.1e-15 84.7 57 63.2
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.9e-13 79.0 47 74.5
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 5.1e-13 78.6 53 69.8
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 2.5e-12 76.3 46 76.1
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 8.1e-11 71.2 48 70.8
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.1e-10 70.9 46 69.6
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 4.0e-10 68.9 46 65.2
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 6.9e-10 68.2 77 50.6
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 2.9e-08 62.8 91 46.2
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 2.1e-06 56.6 32 84.4


User provided reference genes

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