Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 7.6e-112 407.1 201 100.0
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 2.4e-65 252.7 198 68.7
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 2.7e-64 249.2 198 68.2
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 2.9e-63 245.7 160 77.5
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 8.6e-63 244.2 198 67.7
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 8.6e-63 244.2 198 67.7
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 1.5e-62 243.4 198 66.2
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 7.2e-62 241.1 198 66.2
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 6.1e-61 238.0 208 63.5
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 6.1e-61 238.0 192 67.7
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 8.0e-61 237.7 198 64.6
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.0e-61 237.7 198 64.6
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.0e-61 237.7 198 64.6
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.0e-61 237.7 198 64.6
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-60 236.9 198 65.2
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-60 236.9 198 65.2
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 5.2e-60 235.0 198 64.6
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 6.8e-60 234.6 198 64.6
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 2.6e-59 232.6 198 64.6
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.6e-59 232.6 198 64.1
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 4.4e-59 231.9 198 63.6
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 5.7e-59 231.5 198 63.1
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 7.5e-59 231.1 198 63.1
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 7.5e-59 231.1 198 63.6
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 7.5e-59 231.1 198 63.6
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 9.8e-59 230.7 198 64.6
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.7e-58 229.9 198 63.1
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 1.7e-58 229.9 198 63.1
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 2.2e-58 229.6 198 63.1
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.8e-58 229.2 205 62.4
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 3.7e-58 228.8 205 62.0
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.9e-58 228.4 198 63.1
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.9e-58 228.4 200 63.0
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 6.3e-58 228.0 213 60.6
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 6.3e-58 228.0 205 62.4
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 6.3e-58 228.0 205 62.4
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 8.3e-58 227.6 239 54.4
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.1e-57 227.3 239 54.0
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.4e-57 226.9 205 61.0
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 2.4e-57 226.1 198 62.6
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.1e-57 225.7 198 62.1
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 3.1e-57 225.7 198 62.1
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 7.0e-57 224.6 198 61.6
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 1.6e-56 223.4 198 61.1
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.0e-56 223.0 198 61.6
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.0e-56 223.0 198 61.6
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.5e-56 222.2 198 61.6
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 4.5e-56 221.9 198 62.6
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.7e-55 219.9 198 60.1
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 2.9e-55 219.2 198 61.1
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 3.8e-55 218.8 198 59.6
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 5.0e-55 218.4 198 60.6
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 8.6e-55 217.6 198 59.1
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 1.5e-54 216.9 198 60.1
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 59.6
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 59.6
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 61.6
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 61.6
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 61.6
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 4.3e-54 215.3 198 60.1
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 5.6e-54 214.9 201 60.7
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 9.5e-54 214.2 199 59.8
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.8e-53 212.6 198 60.1
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.7e-53 211.8 212 57.5
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.7e-53 211.8 212 57.5
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 8.0e-53 211.1 199 60.3
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 8.0e-53 211.1 224 57.1
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.0e-52 210.7 250 51.2
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.4e-52 210.3 198 59.1
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.1e-52 209.1 198 58.6
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 3.1e-52 209.1 199 59.8
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 4.0e-52 208.8 199 58.3
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.2e-52 208.4 198 58.6
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 5.2e-52 208.4 198 59.6
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.5e-51 206.8 198 58.1
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.5e-51 206.8 199 58.8
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 2.0e-51 206.5 198 58.6
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 2.6e-51 206.1 198 59.6
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 7.5e-51 204.5 198 58.1
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 1.7e-50 203.4 198 58.1
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 1.7e-50 203.4 194 58.2
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.7e-50 203.4 204 55.9
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.9e-50 202.6 199 56.8
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.9e-50 202.6 198 58.1
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.9e-50 202.6 205 57.6
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 4.9e-50 201.8 200 56.5
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.9e-50 201.8 203 55.7
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 6.4e-50 201.4 198 57.6
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.1e-49 200.7 198 57.6
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.1e-49 200.7 198 57.6
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.1e-49 200.7 198 57.6
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.1e-49 200.7 198 57.6
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.1e-49 200.7 198 57.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.4e-49 199.5 199 55.3
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 2.4e-49 199.5 170 62.4
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-49 198.7 198 57.1
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-49 198.7 198 57.1
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 4.1e-49 198.7 155 64.5
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.4e-49 198.4 203 56.2
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 2.7e-48 196.1 199 55.3
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 3.5e-48 195.7 198 55.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 5.0e-47 191.8 195 55.4
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 2.8e-45 186.0 198 54.0
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 8.9e-44 181.0 155 60.6
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 3.2e-41 172.6 172 58.7
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 9.2e-41 171.0 159 60.4
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 6.0e-40 168.3 96 82.3
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 7.3e-38 161.4 200 48.0
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.6e-37 160.2 94 80.9
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 2.1e-37 159.8 202 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 2.3e-36 156.4 206 47.1
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 5.8e-35 151.8 158 52.5
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.9e-34 149.4 83 84.3
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 5.4e-33 145.2 94 71.3
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 7.1e-33 144.8 83 81.9
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 3.5e-32 142.5 199 44.2
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.7e-24 116.3 133 48.1
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.5e-24 115.9 69 81.2
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 7.8e-24 114.8 132 51.5
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 3.9e-23 112.5 67 80.6
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 5.6e-22 108.6 204 36.3
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 9.6e-22 107.8 190 39.5
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.2e-19 100.9 63 74.6
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 1.5e-19 100.5 199 35.2
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 5.1e-15 85.5 67 67.2
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.5e-14 84.0 67 68.7
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 4.3e-14 82.4 67 67.2
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 7.3e-14 81.6 68 64.7
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 4.8e-13 79.0 220 28.2
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.9e-10 69.7 90 43.3
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 8.4e-10 68.2 67 59.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.4e-09 67.4 67 59.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.6e-08 63.9 43 69.8
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 2.1e-08 63.5 55 61.8


User provided reference genes

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