Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.1e-131 473.4 248 100.0
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.0e-110 401.7 248 84.3
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 9.8e-93 344.0 248 71.0
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.8e-91 339.7 248 71.4
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.6e-90 336.7 241 73.4
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.3e-89 333.6 248 70.2
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.9e-88 329.7 240 70.8
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 7.3e-88 327.8 238 71.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.2e-87 327.0 238 70.2
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.6e-87 325.5 238 70.2
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 2.6e-85 319.3 236 68.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.4e-85 318.5 242 65.7
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 5.8e-85 318.2 238 70.2
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 9.8e-85 317.4 243 67.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 3.7e-84 315.5 238 68.9
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 8.3e-84 314.3 241 66.8
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-83 313.9 240 67.5
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 9.2e-83 310.8 238 68.5
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.6e-82 310.1 243 66.3
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 3.5e-82 308.9 241 65.6
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 6.6e-81 304.7 239 67.4
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.5e-80 303.5 242 64.5
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.9e-80 303.1 218 71.6
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 5.6e-80 301.6 242 62.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 7.3e-80 301.2 242 64.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.2e-79 300.4 238 66.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 3.6e-79 298.9 245 61.6
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 4.7e-79 298.5 238 67.2
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 8.0e-79 297.7 245 62.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 8.0e-79 297.7 242 63.6
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-78 296.2 236 64.8
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.2e-77 293.9 238 63.4
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.2e-77 293.9 240 62.9
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.2e-77 293.9 240 62.9
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.0e-77 293.1 236 64.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.6e-77 292.7 237 60.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 9.8e-77 290.8 235 63.0
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.4e-75 287.0 234 65.0
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.9e-75 286.6 235 61.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 2.4e-75 286.2 235 62.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.4e-75 285.0 242 62.4
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 7.0e-75 284.6 258 57.0
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 9.2e-75 284.3 238 63.0
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.7e-74 282.7 275 55.3
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-73 278.9 248 58.9
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.9e-73 278.9 235 61.7
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 8.1e-71 271.2 241 58.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.4e-70 270.4 236 60.6
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.8e-70 270.0 243 59.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 5.2e-70 268.5 225 64.0
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.8e-70 268.1 209 65.6
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.4e-69 265.8 243 57.6
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.7e-68 262.3 207 65.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.1e-67 260.8 247 54.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 7.1e-67 258.1 244 56.1
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.6e-66 255.4 266 55.6
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 4.6e-66 255.4 197 68.5
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 7.8e-66 254.6 196 66.3
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.7e-65 253.4 244 54.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.7e-65 253.4 207 62.3
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.5e-64 250.4 239 54.8
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 4.3e-64 248.8 239 54.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 4.3e-64 248.8 248 54.0
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 4.3e-64 248.8 239 54.4
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 4.3e-64 248.8 210 60.5
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-63 247.3 239 54.0
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.2e-63 247.3 238 54.2
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.8e-63 246.1 239 53.6
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.8e-63 246.1 250 53.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 2.8e-63 246.1 237 54.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 4.7e-63 245.4 239 54.0
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 4.7e-63 245.4 239 54.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 8.1e-63 244.6 195 64.6
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 8.1e-63 244.6 239 54.8
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 8.1e-63 244.6 238 55.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.1e-63 244.6 294 49.3
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.4e-62 243.0 197 64.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 5.2e-62 241.9 196 62.8
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 8.9e-62 241.1 240 53.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 8.9e-62 241.1 242 52.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.0e-61 240.0 280 51.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.4e-61 238.8 224 54.5
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.3e-60 237.3 241 52.7
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.7e-60 236.9 240 51.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.9e-60 236.1 240 53.3
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 6.4e-60 235.0 233 52.4
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 3.5e-58 229.2 207 60.9
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.7e-57 226.9 185 64.3
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 4.3e-56 222.2 238 51.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.4e-54 217.2 242 53.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.2e-52 209.9 238 49.6
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 2.4e-51 206.5 196 54.6
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.0e-50 201.8 196 55.1
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 7.3e-48 194.9 243 47.3
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.8e-47 193.0 248 44.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-46 191.0 244 45.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 9.0e-46 188.0 230 49.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 5.8e-45 185.3 184 56.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-43 181.0 235 40.9
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 3.2e-43 179.5 165 55.8
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-41 173.3 240 41.2
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.1e-41 172.2 244 39.8
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 8.7e-41 171.4 238 40.8
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 6.4e-36 155.2 154 53.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-34 149.4 237 38.4
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-33 147.9 244 35.7
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.9e-33 146.0 242 40.1
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 5.1e-33 145.6 247 35.6
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 7.4e-32 141.7 238 37.8
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.6e-31 140.6 109 64.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-30 137.9 234 35.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.8e-30 137.1 119 58.8
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.9e-30 135.2 240 36.2
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 7.6e-29 131.7 107 58.9
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-28 130.6 184 45.1
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.2e-27 126.3 203 36.9
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 3.9e-25 119.4 102 59.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.8e-23 113.2 151 41.1
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.3e-23 112.1 105 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.1e-22 109.4 118 48.3
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-22 109.4 206 36.4
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 6.9e-22 108.6 105 51.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 5.9e-21 105.5 118 51.7
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.3e-20 104.4 106 52.8
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 8.5e-20 101.7 107 48.6
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 4.3e-16 89.4 126 42.9
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 5.7e-16 89.0 108 49.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.7e-15 87.4 122 43.4
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.8e-15 86.7 167 38.3
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-11 73.6 71 46.5
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.8e-09 67.4 80 42.5
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 8.8e-09 65.1 113 34.5
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.4e-06 57.8 68 48.5
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 3.1e-06 56.6 121 32.2


User provided reference genes

Program Settings