Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.4e-72 276.6 152 100.0
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.7e-61 237.3 152 79.6
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 3.9e-54 215.3 143 75.5
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 9.4e-40 167.5 143 62.2
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.4e-40 167.5 143 62.2
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.7e-38 161.4 143 60.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 9.7e-37 157.5 144 57.6
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.8e-35 153.3 144 59.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 3.3e-24 115.9 126 50.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 7.2e-24 114.8 189 37.6
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 9.5e-24 114.4 119 54.6
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.6e-21 106.3 146 46.6
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 4.4e-21 105.5 121 47.1
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 2.8e-20 102.8 113 52.2
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 4.1e-19 99.0 93 61.3
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 5.4e-19 98.6 126 46.8
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-18 96.7 91 48.4
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 5.9e-18 95.1 83 57.8
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 1.0e-17 94.4 81 58.0
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.3e-17 94.0 89 56.2
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 2.8e-15 86.3 97 50.5
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.7e-15 85.5 103 42.7
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 8.0e-15 84.7 83 44.6
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 8.0e-15 84.7 80 50.0
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 8.0e-15 84.7 80 50.0
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.8e-14 83.6 81 49.4
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 3.1e-14 82.8 108 42.6
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 3.1e-14 82.8 89 48.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.2e-14 82.0 86 48.8
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.8e-14 81.6 86 47.7
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 8.9e-14 81.3 68 58.8
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.2e-13 80.9 88 51.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.5e-13 80.5 86 46.5
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-13 80.1 57 56.1
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 2.6e-13 79.7 103 42.7
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.4e-13 79.3 107 37.4
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 4.4e-13 79.0 94 43.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 5.8e-13 78.6 62 58.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 5.8e-13 78.6 87 49.4
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 7.5e-13 78.2 90 48.9
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 7.5e-13 78.2 93 48.4
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 9.8e-13 77.8 64 62.5
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 1.3e-12 77.4 91 57.1
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.7e-12 77.0 83 44.6
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.7e-12 77.0 77 49.4
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 1.7e-12 77.0 89 57.3
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.9e-12 76.3 77 53.2
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.9e-12 76.3 73 50.7
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.9e-12 76.3 103 48.5
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.9e-12 75.5 52 63.5
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 6.4e-12 75.1 87 44.8
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 6.4e-12 75.1 87 44.8
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 6.4e-12 75.1 101 48.5
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.3e-12 74.7 109 46.8
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 8.3e-12 74.7 82 46.3
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.1e-11 74.3 73 49.3
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.1e-11 74.3 58 60.3
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.9e-11 73.6 62 53.2
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 2.4e-11 73.2 57 57.9
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.4e-11 73.2 104 42.3
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.4e-11 73.2 83 44.6
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.2e-11 72.8 73 47.9
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 3.2e-11 72.8 73 47.9
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 5.4e-11 72.0 91 38.5
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 5.4e-11 72.0 102 45.1
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 7.0e-11 71.6 57 54.4
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 7.0e-11 71.6 55 60.0
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 9.2e-11 71.2 91 47.3
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 9.2e-11 71.2 89 44.9
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 1.2e-10 70.9 70 50.0
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 1.2e-10 70.9 91 40.7
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.2e-10 70.9 49 61.2
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.6e-10 70.5 108 39.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-10 70.5 85 44.7
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 2.0e-10 70.1 115 40.9
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 2.7e-10 69.7 72 47.2
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 3.5e-10 69.3 83 43.4
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.5e-10 69.3 55 60.0
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 3.5e-10 69.3 85 44.7
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 4.6e-10 68.9 66 50.0
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 4.6e-10 68.9 120 35.8
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 4.6e-10 68.9 62 51.6
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.0e-10 68.6 72 47.2
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 6.0e-10 68.6 86 45.3
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 6.0e-10 68.6 74 45.9
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 6.0e-10 68.6 59 54.2
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 6.0e-10 68.6 87 46.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.8e-10 68.2 92 51.1
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 7.8e-10 68.2 73 47.9
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 7.8e-10 68.2 67 55.2
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.8e-10 68.2 75 53.3
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 7.8e-10 68.2 94 43.6
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.0e-09 67.8 73 46.6
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.3e-09 67.4 98 46.9
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.7e-09 67.0 59 50.8
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.3e-09 66.6 75 46.7
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.0e-09 66.2 65 43.1
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 3.0e-09 66.2 51 56.9
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 3.9e-09 65.9 83 41.0
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 3.9e-09 65.9 76 42.1
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 8.6e-09 64.7 46 63.0
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 8.6e-09 64.7 78 46.2
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 1.1e-08 64.3 78 39.7
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 1.1e-08 64.3 63 50.8
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 1.5e-08 63.9 93 37.6
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.9e-08 63.5 84 42.9
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.5e-08 63.2 74 47.3
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 2.5e-08 63.2 63 47.6
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 4.3e-08 62.4 78 42.3
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 5.6e-08 62.0 60 48.3
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 7.3e-08 61.6 71 46.5
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 1.2e-07 60.8 63 52.4
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 1.6e-07 60.5 86 53.5
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-07 60.5 80 55.0
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-07 60.5 77 42.9
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 1.6e-07 60.5 55 49.1
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 2.1e-07 60.1 81 37.0
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.1e-07 60.1 78 42.3
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.8e-07 59.7 67 41.8
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.8e-07 59.7 67 41.8
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.8e-07 59.7 57 52.6
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 6.2e-07 58.5 86 40.7
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 6.2e-07 58.5 95 36.8
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 8.0e-07 58.2 126 32.5
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.4e-06 57.4 83 37.3
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.8e-06 57.0 76 38.2
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 2.3e-06 56.6 87 50.6
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.3e-06 56.6 72 34.7
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 3.1e-06 56.2 37 62.2
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 3.1e-06 56.2 47 44.7
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 4.0e-06 55.8 58 48.3
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 4.0e-06 55.8 39 64.1
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.0e-06 55.8 63 44.4
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 5.2e-06 55.5 41 53.7
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 5.2e-06 55.5 58 44.8
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 5.2e-06 55.5 53 52.8
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.2e-06 55.5 59 44.1
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 5.2e-06 55.5 58 43.1
Zm00001eb260320 Zea mays HOM05D053309 ORTHO05D003655 5.2e-06 55.5 115 31.3
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 6.8e-06 55.1 85 41.2
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 6.8e-06 55.1 39 64.1


User provided reference genes

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