Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.7e-133 479.6 279 100.0
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 2.3e-106 389.4 274 86.5
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.4e-103 379.4 273 73.3
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 5.3e-103 378.3 273 73.3
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.4e-102 375.6 273 73.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.7e-98 360.9 267 72.3
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.2e-93 346.3 279 67.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 2.9e-93 345.9 269 68.0
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 8.4e-93 344.4 279 66.7
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.9e-92 343.2 261 70.9
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 5.5e-92 341.7 276 65.2
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 9.3e-92 340.9 279 64.9
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 3.0e-90 335.9 266 66.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.1e-89 334.0 268 64.9
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.9e-89 333.2 277 61.4
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.5e-89 332.8 277 61.4
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.4e-89 331.3 277 61.0
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 9.6e-89 330.9 195 85.1
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.4e-87 327.0 258 64.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.4e-87 326.2 280 62.1
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 2.4e-87 326.2 279 60.2
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.1e-87 325.5 278 63.3
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 4.1e-87 325.5 263 63.1
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 5.3e-87 325.1 258 64.0
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.5e-86 323.6 265 63.8
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 2.0e-86 323.2 276 61.2
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 2.0e-86 323.2 279 60.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.6e-86 322.8 280 62.1
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 3.4e-86 322.4 259 63.3
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 3.4e-86 322.4 257 65.8
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 4.5e-86 322.0 270 61.9
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 7.6e-86 321.2 268 62.7
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 7.6e-86 321.2 267 61.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.0e-85 320.9 209 75.6
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-85 320.9 279 59.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.8e-85 318.9 270 61.9
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 3.8e-85 318.9 279 59.5
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 6.5e-85 318.2 209 76.6
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 6.5e-85 318.2 269 61.7
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 6.5e-85 318.2 270 61.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.1e-84 317.4 269 61.3
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.4e-84 317.0 270 60.0
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 1.9e-84 316.6 209 75.6
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.5e-84 316.2 270 61.9
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 3.2e-84 315.8 270 63.3
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 3.2e-84 315.8 270 61.1
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 5.5e-84 315.1 258 63.2
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 7.2e-84 314.7 280 59.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 7.2e-84 314.7 258 62.8
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 7.2e-84 314.7 276 59.1
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 9.3e-84 314.3 270 60.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 4.6e-83 312.0 268 60.8
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 6.1e-83 311.6 209 71.8
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.3e-82 310.5 276 61.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.3e-82 310.5 270 60.0
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 3.0e-82 309.3 279 59.1
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.9e-82 308.9 280 58.2
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 8.7e-82 307.8 261 61.3
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.1e-81 307.4 270 58.9
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.5e-81 307.0 270 58.9
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 5.7e-81 305.1 294 58.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 7.4e-81 304.7 279 57.0
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-81 304.7 262 59.9
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 7.4e-81 304.7 276 59.8
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 9.7e-81 304.3 261 59.4
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-80 303.9 272 57.7
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.3e-80 303.9 272 57.7
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.3e-80 303.9 262 59.9
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.6e-80 303.5 262 59.9
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.6e-80 303.5 262 59.9
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.6e-80 303.5 262 59.9
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.6e-80 303.5 262 59.9
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.6e-80 303.5 276 57.2
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 3.7e-80 302.4 277 58.1
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.4e-79 300.4 261 58.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.8e-79 300.1 255 65.1
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 5.3e-79 298.5 279 56.3
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.5e-78 297.0 259 57.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 5.9e-78 295.0 282 57.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.3e-77 293.9 270 55.9
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.3e-77 293.9 209 66.5
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 2.2e-77 293.1 266 59.0
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.9e-77 292.7 273 55.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 5.0e-77 292.0 256 59.0
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.1e-76 290.8 270 57.4
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 2.5e-76 289.7 262 58.8
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 9.4e-76 287.7 209 66.0
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 7.9e-75 284.6 277 55.6
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.6e-73 279.6 197 68.0
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.8e-72 276.2 263 54.8
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 4.8e-72 275.4 212 63.2
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 6.3e-72 275.0 244 58.2
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 7.2e-68 261.5 270 54.4
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 8.8e-66 254.6 216 65.7
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.3e-64 250.8 209 59.8
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.6e-59 233.8 151 73.5
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.0e-58 231.1 225 57.3
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 5.7e-57 225.3 139 80.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.7e-56 223.8 209 52.2
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.1e-55 221.1 209 55.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-54 217.6 128 84.4
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.5e-49 200.7 153 63.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.7e-46 189.9 274 44.5
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 7.7e-46 188.3 274 43.4
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 5.5e-44 182.2 213 48.4
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 6.8e-42 175.3 199 50.3
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.8e-39 167.2 246 39.4
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.6e-38 164.1 270 39.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 9.5e-36 154.8 182 50.0
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 6.8e-34 148.7 263 38.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.0e-33 147.1 209 42.1
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-31 141.0 80 85.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 3.2e-31 139.8 176 43.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.0e-30 137.1 110 68.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 9.8e-25 118.2 255 36.1
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-17 94.7 66 74.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 7.1e-15 85.5 106 48.1
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.6e-14 84.3 97 52.6
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.6e-14 84.3 50 84.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 5.1e-13 79.3 51 68.6
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.9e-07 60.8 204 25.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 2.4e-07 60.5 47 53.2
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-07 59.7 33 81.8
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 9.2e-07 58.5 39 64.1


User provided reference genes

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