Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 4.3e-292 1007.3 520 100.0
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 4.1e-250 867.8 465 97.0
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.2e-226 788.5 500 83.8
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.7e-174 615.5 502 68.5
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.1e-122 444.5 507 53.3
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.7e-119 432.2 507 52.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.1e-117 427.9 498 52.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.6e-115 418.7 507 51.7
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.3e-114 416.4 507 51.3
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 4.4e-111 406.0 496 51.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 2.9e-110 403.3 507 50.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 3.6e-105 386.3 495 50.7
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.7e-100 370.2 464 50.6
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.7e-91 340.9 492 46.3
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.3e-90 335.5 509 46.4
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 4.0e-88 329.7 525 45.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.5e-87 327.8 507 45.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.5e-87 327.8 495 45.7
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.3e-83 314.7 507 42.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 3.0e-83 313.5 505 43.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.3e-82 310.1 467 46.3
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.2e-81 308.1 506 40.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.1e-80 305.1 510 44.3
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.1e-80 303.5 507 44.4
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 4.0e-80 303.1 505 42.4
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.8e-79 299.3 509 42.6
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-78 298.1 501 40.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.3e-78 298.1 508 41.7
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.3e-77 292.0 510 43.5
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.6e-76 291.2 493 42.4
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.3e-75 288.1 501 42.1
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.3e-75 288.1 506 41.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.3e-75 288.1 489 44.2
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.6e-75 285.8 508 40.4
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-73 280.0 538 40.9
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 6.2e-73 279.3 503 40.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 6.2e-73 279.3 515 38.4
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.4e-72 278.1 505 41.6
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 4.0e-72 276.6 507 42.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.9e-70 270.4 489 42.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.1e-69 268.5 509 41.3
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.2e-69 266.9 490 39.6
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 4.2e-69 266.5 513 40.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.2e-69 266.5 499 39.5
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 9.3e-69 265.4 350 48.0
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.7e-67 261.2 515 38.8
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.7e-67 261.2 500 42.0
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 4.3e-66 256.5 310 49.7
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.1e-64 251.9 510 39.8
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 5.3e-64 249.6 503 40.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 7.6e-63 245.7 342 45.9
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.2e-62 244.2 304 49.0
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 6.4e-62 242.7 494 38.3
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.1e-61 241.9 508 40.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.9e-61 241.1 502 37.3
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.4e-61 240.7 514 37.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 5.5e-61 239.6 330 45.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.2e-60 238.4 518 36.5
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.1e-60 237.7 328 46.3
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 6.0e-60 236.1 488 35.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 7.9e-60 235.7 494 37.2
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.0e-59 235.3 508 40.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.8e-59 234.6 496 36.3
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.0e-59 233.8 496 37.9
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 3.0e-59 233.8 388 40.7
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 3.9e-59 233.4 354 43.2
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 6.7e-59 232.6 430 37.2
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.3e-57 228.4 526 35.6
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.6e-57 228.0 304 49.3
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.6e-57 228.0 516 35.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.8e-57 227.3 324 45.7
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.8e-57 227.3 503 36.2
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 2.8e-57 227.3 516 35.1
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.7e-57 226.9 334 45.8
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 3.7e-57 226.9 394 41.6
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 4.8e-57 226.5 304 47.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 6.2e-57 226.1 506 35.8
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 8.1e-57 225.7 536 34.9
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 9.0e-56 222.2 326 45.7
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 2.6e-55 220.7 304 46.7
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 7.6e-55 219.2 364 41.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 7.6e-55 219.2 504 35.9
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.3e-54 218.4 304 46.1
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.4e-53 214.9 518 38.2
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.9e-53 214.5 366 38.3
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.9e-53 214.5 260 50.0
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 5.5e-53 213.0 311 45.3
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 7.1e-53 212.6 346 42.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 7.1e-53 212.6 510 34.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.7e-52 210.7 271 49.1
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 3.5e-52 210.3 304 46.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 7.9e-52 209.1 304 46.1
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.9e-52 209.1 309 43.0
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.9e-52 209.1 309 43.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.0e-51 208.8 278 47.8
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 3.0e-51 207.2 304 44.7
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 3.0e-51 207.2 545 35.2
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 5.1e-51 206.5 526 36.5
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.1e-51 206.5 304 44.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 6.7e-51 206.1 304 44.4
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 3.3e-50 203.8 310 41.3
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.3e-49 201.8 501 33.9
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.6e-49 201.4 523 34.4
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.7e-49 200.3 481 35.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 4.8e-49 199.9 300 43.0
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.1e-48 198.7 328 43.3
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 2.4e-48 197.6 437 35.2
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.4e-48 197.6 514 32.5
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.2e-47 195.3 512 35.4
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.0e-47 194.5 360 39.7
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 2.6e-47 194.1 302 41.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.6e-47 194.1 504 34.1
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.6e-47 194.1 494 34.4
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.9e-47 193.0 376 39.1
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.6e-44 183.3 521 32.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.0e-43 182.2 223 48.4
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.3e-42 177.2 281 43.4
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 2.4e-40 171.0 188 54.8
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.9e-38 164.1 328 35.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.8e-38 163.7 270 41.5
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.4e-37 161.8 328 35.4
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-37 161.0 328 35.4
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.2e-37 160.6 228 43.9
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-36 157.1 141 58.2
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 6.1e-36 156.4 291 38.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.4e-35 155.2 510 31.8
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 3.9e-35 153.7 282 40.1
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 7.4e-34 149.4 218 44.5
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.1e-32 143.7 212 45.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.8e-30 137.1 215 43.7
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 8.5e-30 136.0 172 51.7
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.3e-25 122.1 262 37.0
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.3e-25 122.1 262 37.0
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.2e-25 121.3 187 41.7
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.8e-24 118.2 337 30.9
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 9.1e-24 115.9 264 35.2
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.9e-23 113.2 142 53.5
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.2e-22 111.3 299 35.8
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.6e-20 104.0 210 41.0
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 6.7e-19 99.8 181 38.1
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.8e-17 93.6 184 38.6
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 6.3e-17 93.2 183 40.4
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 5.5e-13 80.1 98 54.1
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 7.2e-13 79.7 120 45.0
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.2e-11 73.6 202 32.2
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 8.8e-11 72.8 295 28.1
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 8.8e-11 72.8 281 28.1
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 3.1e-08 64.3 57 56.1
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 4.1e-08 63.9 46 71.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.4e-08 63.5 57 52.6
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.0e-06 59.3 53 56.6


User provided reference genes

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