Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1206.4 620 100.0
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 1.9e-209 733.0 1034 46.4
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.7e-202 709.9 1030 45.5
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 1.7e-202 709.9 1030 45.3
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.1e-201 707.2 1030 45.3
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 1.4e-201 706.8 1034 45.6
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 9.3e-201 704.1 1030 45.1
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 4.1e-196 688.7 1038 44.6
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 6.9e-196 688.0 1063 43.7
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 1.6e-192 676.8 954 46.1
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.5e-192 675.6 644 59.5
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.9e-191 672.2 644 59.2
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 3.3e-190 669.1 1034 43.4
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 5.7e-190 668.3 1025 43.9
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 1.4e-188 663.7 644 58.5
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 1.5e-187 660.2 1035 43.1
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 3.4e-187 659.1 1030 43.6
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.0e-186 657.5 644 57.9
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 1.0e-186 657.5 644 57.8
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.3e-186 657.1 644 57.6
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 1.1e-185 654.1 1033 42.9
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 1.9e-185 653.3 644 57.9
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 3.2e-185 652.5 644 58.2
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 4.2e-185 652.1 644 58.4
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 5.5e-185 651.7 642 57.6
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 1.2e-184 650.6 643 57.4
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 2.7e-184 649.4 646 56.5
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 3.9e-183 645.6 1036 42.2
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.7e-183 644.8 1033 42.3
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 6.7e-183 644.8 1033 42.4
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 2.5e-182 642.9 644 56.8
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 2.5e-182 642.9 1033 42.4
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 5.7e-182 641.7 1036 42.4
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 7.4e-182 641.3 645 56.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 2.2e-181 639.8 1033 42.4
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 2.2e-181 639.8 1033 42.4
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 3.7e-181 639.0 644 57.0
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 3.7e-181 639.0 644 56.2
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 3.7e-181 639.0 1033 42.4
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 6.9e-180 634.8 637 57.5
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.5e-179 633.6 645 55.7
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 2.0e-179 633.3 1033 41.6
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.6e-179 632.9 644 56.2
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 2.6e-179 632.9 645 54.9
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 1.7e-178 630.2 1035 41.9
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 2.2e-178 629.8 1032 41.7
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.9e-178 629.4 644 55.9
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.9e-178 629.4 644 56.2
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 2.9e-178 629.4 645 54.7
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.8e-178 629.0 644 56.1
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.4e-177 627.1 643 55.7
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 1.9e-177 626.7 642 55.1
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.5e-177 626.3 644 55.9
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 2.5e-177 626.3 1035 41.5
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 3.2e-177 625.9 1032 41.5
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 4.2e-177 625.5 1034 41.5
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 7.2e-177 624.8 644 55.0
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 1.2e-176 624.0 644 56.2
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 3.9e-175 619.0 1034 41.7
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 3.9e-175 619.0 645 55.8
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 6.7e-175 618.2 644 55.6
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.7e-175 618.2 644 55.4
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.5e-174 617.1 643 55.2
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 2.6e-174 616.3 643 55.8
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 2.6e-174 616.3 644 55.4
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 7.4e-174 614.8 650 54.8
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 9.7e-174 614.4 1036 40.5
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 1.7e-173 613.6 655 54.5
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 3.7e-173 612.5 670 53.4
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 2.0e-171 606.7 647 54.3
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 4.5e-171 605.5 643 55.2
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 7.7e-171 604.7 642 53.4
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.7e-171 604.7 994 42.0
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 2.2e-170 603.2 645 54.7
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 2.2e-170 603.2 644 53.9
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 2.2e-170 603.2 1034 40.3
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 6.5e-170 601.7 1032 39.9
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 1.5e-169 600.5 1034 40.5
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.5e-169 600.5 646 53.9
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 1.9e-169 600.1 1034 40.2
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 2.5e-169 599.7 1019 40.0
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 9.4e-169 597.8 646 53.9
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 2.1e-168 596.7 644 53.3
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 6.1e-168 595.1 651 53.6
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 1.0e-167 594.3 644 53.7
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 1.4e-167 594.0 636 54.9
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 5.2e-167 592.0 644 53.4
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 1.1e-166 590.9 651 53.3
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 7.5e-166 588.2 641 53.7
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 9.7e-166 587.8 706 50.7
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 1.7e-165 587.0 646 53.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.7e-165 585.9 647 52.1
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 6.3e-165 585.1 646 53.4
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 8.2e-165 584.7 646 53.4
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 8.2e-165 584.7 646 53.3
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 4.1e-164 582.4 646 53.3
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 4.1e-164 582.4 646 53.3
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 5.3e-164 582.0 646 53.3
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 9.1e-164 581.3 646 53.1
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 9.1e-164 581.3 646 53.6
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 1.2e-163 580.9 646 53.1
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 1.0e-162 577.8 646 53.3
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.1e-161 574.3 647 51.9
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 1.5e-161 573.9 646 52.8
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 8.8e-159 564.7 643 50.5
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.4e-158 562.4 509 60.7
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 1.7e-157 560.5 648 52.0
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 2.1e-152 543.5 671 49.9
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 4.1e-148 529.3 654 49.5
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 1.1e-145 521.2 644 47.8
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 2.3e-143 513.5 645 47.3
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.0e-143 512.7 642 48.0
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 7.5e-142 508.4 644 47.4
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 9.8e-134 481.5 649 45.6
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 6.0e-131 472.2 644 45.0
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 9.2e-124 448.4 642 43.6
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.3e-122 443.7 517 52.2
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 4.3e-121 439.5 510 51.6
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 9.5e-121 438.3 645 42.9
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 2.9e-117 426.8 630 44.3
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 1.6e-115 421.0 633 44.1
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 4.3e-113 412.9 643 43.4
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 2.8e-112 410.2 643 43.2
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 8.1e-112 408.7 643 43.4
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.4e-86 323.6 418 46.4
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 4.6e-83 313.2 609 36.9
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 2.2e-77 294.3 634 34.7
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 2.2e-69 267.7 201 71.1
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 6.1e-67 259.6 201 68.2
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 3.3e-65 253.8 638 31.7
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.4e-65 253.4 201 67.7
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.9e-60 238.0 208 64.4
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 1.1e-57 228.8 182 67.0
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 2.4e-55 221.1 247 50.2
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 2.4e-55 221.1 486 33.3
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 6.7e-50 203.0 312 40.1
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 3.1e-39 167.5 382 32.7
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.5e-30 137.5 464 27.4
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 4.5e-30 137.1 134 58.2
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.5e-28 132.1 72 86.1
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 4.7e-27 127.1 146 52.1
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 8.0e-27 126.3 81 76.5
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 3.0e-26 124.4 115 60.0
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 8.3e-24 116.3 141 51.1
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 1.1e-23 115.9 132 53.8
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-22 112.5 107 57.0
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-22 112.5 107 57.0
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-22 112.5 107 57.0
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 3.0e-21 107.8 129 51.9
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 8.6e-21 106.3 65 76.9
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 1.1e-20 105.9 141 39.7
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 1.1e-20 105.9 194 35.6
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 4.3e-20 104.0 59 83.1
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 5.6e-20 103.6 51 94.1
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 2.3e-18 98.2 61 80.3
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 2.0e-14 85.1 44 90.9
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 2.7e-14 84.7 46 84.8
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 3.0e-13 81.3 125 40.8
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 5.2e-10 70.5 74 52.7
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 4.9e-08 63.9 83 47.0
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 7.8e-06 56.6 39 66.7
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.8e-06 56.6 158 33.5


User provided reference genes

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