Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 1.6e-106 389.4 191 100.0
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 5.1e-89 331.3 179 89.4
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 3.3e-80 302.0 179 82.7
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 9.6e-80 300.4 179 82.1
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 5.8e-77 291.2 179 79.3
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.9e-75 286.2 179 78.8
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.7e-73 279.6 179 76.5
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 5.6e-72 274.6 179 76.5
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 5.6e-72 274.6 180 77.8
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.3e-71 273.5 179 75.4
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 4.8e-71 271.6 191 70.2
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.8e-70 269.6 179 72.6
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 4.0e-70 268.5 179 72.1
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 4.0e-70 268.5 179 72.1
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 9.0e-70 267.3 180 75.0
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 1.2e-69 266.9 179 72.6
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 4.5e-69 265.0 179 71.5
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 5.8e-69 264.6 179 71.5
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 5.8e-69 264.6 179 72.1
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 7.6e-69 264.2 179 72.1
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 1.3e-68 263.5 179 72.1
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.4e-67 260.0 179 70.9
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.9e-67 259.6 180 72.2
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 1.9e-67 259.6 180 70.0
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 3.2e-67 258.8 179 72.6
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 3.2e-67 258.8 192 67.7
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 3.2e-67 258.8 179 71.5
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 7.1e-67 257.7 180 72.2
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 1.2e-66 256.9 180 68.9
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.2e-66 256.9 192 67.2
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 2.7e-66 255.8 180 71.1
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.5e-66 255.4 192 67.2
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 4.6e-66 255.0 179 69.8
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.6e-66 255.0 179 69.8
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 4.6e-66 255.0 180 69.4
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 4.6e-66 255.0 179 70.9
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.9e-66 254.2 179 69.3
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 1.0e-65 253.8 179 70.4
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 1.0e-65 253.8 179 68.7
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.3e-65 253.4 179 72.6
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.8e-65 253.1 179 69.3
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.3e-65 252.7 179 68.7
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 2.3e-65 252.7 179 71.5
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 3.9e-65 251.9 179 72.1
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.1e-64 250.4 179 71.5
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.5e-64 250.0 192 66.1
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.9e-64 249.6 171 70.8
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 3.3e-64 248.8 179 68.2
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 5.6e-64 248.1 179 69.3
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.4e-64 247.7 180 67.8
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 9.6e-64 247.3 180 67.2
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 1.3e-63 246.9 179 67.6
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.1e-63 246.1 180 69.4
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 4.8e-63 245.0 179 68.2
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 6.2e-63 244.6 182 68.7
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.1e-63 244.2 180 67.2
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 4.0e-62 241.9 179 68.7
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.5e-61 240.0 181 65.7
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 2.0e-61 239.6 179 65.4
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 2.0e-61 239.6 182 67.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.4e-61 238.8 180 65.0
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 4.5e-61 238.4 179 65.4
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 5.8e-61 238.0 187 63.1
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.7e-60 236.5 182 67.6
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 2.2e-60 236.1 179 70.4
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 2.9e-60 235.7 179 64.8
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 8.4e-60 234.2 182 63.7
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 1.9e-59 233.0 180 64.4
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 4.2e-59 231.9 179 62.6
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.2e-59 231.9 179 64.8
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 7.1e-59 231.1 179 63.1
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.5e-58 228.8 179 66.5
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 4.6e-58 228.4 181 61.3
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 6.0e-58 228.0 179 63.7
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 7.9e-58 227.6 181 61.9
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 7.9e-58 227.6 197 59.9
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 1.8e-57 226.5 182 61.5
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 1.8e-57 226.5 182 61.5
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 3.0e-57 225.7 183 64.5
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 1.9e-56 223.0 181 63.5
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 1.9e-56 223.0 162 66.7
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 3.3e-56 222.2 181 58.6
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 3.3e-56 222.2 179 64.2
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.3e-56 221.9 172 64.5
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 9.6e-56 220.7 182 62.1
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 1.3e-55 220.3 184 60.9
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.8e-55 219.2 180 62.8
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 2.8e-55 219.2 173 64.2
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 3.7e-55 218.8 175 64.0
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 3.7e-55 218.8 181 59.1
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 4.8e-55 218.4 175 63.4
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 6.2e-55 218.0 182 58.8
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 8.1e-55 217.6 182 58.2
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.1e-54 217.2 182 60.4
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 9.0e-54 214.2 170 64.7
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 2.6e-53 212.6 229 52.4
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 3.4e-53 212.2 174 62.6
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 6.5e-52 208.0 179 59.2
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 8.4e-52 207.6 179 59.8
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 1.6e-50 203.4 183 56.3
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 5.7e-48 194.9 179 60.3
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 9.6e-48 194.1 240 47.9
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.1e-46 190.7 179 54.2
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 1.2e-45 187.2 179 52.5
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.5e-45 186.8 179 55.3
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 1.3e-44 183.7 184 51.6
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 1.9e-43 179.9 138 65.9
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 9.3e-43 177.6 185 49.2
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 1.3e-41 173.7 193 49.2
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 1.8e-41 173.3 125 68.0
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 3.0e-41 172.6 183 49.2
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 3.0e-41 172.6 187 50.3
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 6.3e-39 164.9 144 59.0
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 4.1e-38 162.2 184 47.8
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.0e-33 147.5 183 45.4
CSS0034529 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 1.5e-32 143.7 144 56.2
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.7e-31 140.2 133 58.6
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.4e-30 136.3 174 44.3
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.6e-29 132.9 136 52.9
FAN07G2139 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.1e-27 127.5 99 66.7
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 1.9e-27 126.7 85 68.2
FAN20G0117 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.2e-27 125.9 135 54.8
FAN21G3631 Fragaria x ananassa HOM05D003479 ORTHO05D019150 8.8e-25 117.9 88 67.0
FAN07G2883 Fragaria x ananassa HOM05D003479 ORTHO05D019150 3.7e-23 112.5 117 53.8
FvH4_5g36090 Fragaria vesca HOM05D003479 ORTHO05D019150 4.8e-15 85.5 70 62.9
FAN08G3605 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.8e-14 83.6 70 61.4
FAN18G2819 Fragaria x ananassa HOM05D003479 ORTHO05D019150 1.2e-13 80.9 70 61.4
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.5e-11 73.9 183 29.5
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 2.5e-11 73.2 187 28.3
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.2e-11 72.8 187 29.9
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 5.5e-11 72.0 189 31.2
HPP92_010572 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.2e-11 71.6 62 56.5
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 6.1e-10 68.6 185 29.7
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 6.1e-10 68.6 190 31.6
Gohir.D10G206200 Gossypium hirsutum HOM05D003479 ORTHO05D010805 1.5e-08 63.9 40 65.0
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 2.0e-08 63.5 184 28.8
AUR62024548 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.6e-08 63.2 43 60.5
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 3.4e-08 62.8 35 77.1
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 2.2e-07 60.1 35 71.4
Gorai.002G187600 Gossypium raimondii HOM05D003479 ORTHO05D010805 2.2e-07 60.1 40 60.0
Gohir.D10G172275 Gossypium hirsutum HOM05D003479 ORTHO05D010805 2.8e-07 59.7 40 60.0
Gorai.011G192500 Gossypium raimondii HOM05D003479 ORTHO05D010805 2.8e-07 59.7 40 60.0
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 8.3e-07 58.2 34 70.6
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-06 57.4 35 74.3
Gohir.D01G151300 Gossypium hirsutum HOM05D003479 ORTHO05D047205 7.0e-06 55.1 33 66.7
Gorai.012G106800 Gossypium raimondii HOM05D003479 ORTHO05D047205 7.0e-06 55.1 33 66.7
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 7.0e-06 55.1 34 64.7


User provided reference genes

Program Settings