Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 2.1e-103 379.0 194 100.0
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 2.5e-67 259.2 199 73.4
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 8.3e-55 217.6 195 61.0
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.4e-54 216.9 217 61.8
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.4e-54 216.1 222 59.5
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 7.0e-54 214.5 193 60.1
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 9.2e-54 214.2 212 61.8
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 2.0e-53 213.0 198 66.2
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 5.9e-53 211.5 195 60.0
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 1.7e-52 209.9 196 59.7
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 3.3e-51 205.7 204 59.8
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 5.6e-51 204.9 183 62.3
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 2.8e-50 202.6 172 63.4
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 3.4e-48 195.7 183 56.8
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 3.4e-48 195.7 196 56.6
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 3.4e-48 195.7 167 59.9
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 3.4e-48 195.7 167 59.9
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 7.5e-48 194.5 170 61.2
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 9.8e-48 194.1 167 59.3
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 1.3e-47 193.7 172 57.0
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 1.4e-46 190.3 170 60.0
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 1.8e-46 189.9 164 62.2
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 2.4e-46 189.5 179 57.5
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 1.6e-45 186.8 157 63.1
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 2.7e-45 186.0 176 62.5
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 4.6e-45 185.3 153 62.1
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 1.0e-44 184.1 164 57.9
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 3.0e-44 182.6 168 58.9
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 3.3e-43 179.1 177 55.9
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 4.3e-43 178.7 155 61.3
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 5.6e-43 178.3 184 51.6
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 7.3e-43 177.9 172 55.2
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 1.6e-42 176.8 173 54.9
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 2.8e-42 176.0 184 51.1
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 3.6e-42 175.6 183 53.6
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 4.7e-42 175.3 178 55.1
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 4.7e-42 175.3 185 50.3
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 6.2e-42 174.9 152 59.2
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 6.2e-42 174.9 157 59.9
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 8.0e-42 174.5 182 54.9
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 1.0e-41 174.1 157 56.1
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 1.4e-41 173.7 175 54.3
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 1.4e-41 173.7 168 54.2
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 1.8e-41 173.3 195 52.8
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 1.5e-40 170.2 187 52.4
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 3.4e-40 169.1 166 51.8
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 4.4e-40 168.7 162 53.1
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 4.4e-40 168.7 169 55.0
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 4.4e-40 168.7 176 54.0
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 5.8e-40 168.3 172 55.2
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 1.3e-39 167.2 170 54.1
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 1.3e-39 167.2 150 60.7
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 1.7e-39 166.8 137 59.9
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 1.7e-39 166.8 149 59.7
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 1.7e-39 166.8 154 57.8
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 2.2e-39 166.4 153 54.9
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 4.9e-39 165.2 147 55.1
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 6.4e-39 164.9 148 56.8
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 1.1e-38 164.1 146 56.2
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 1.1e-38 164.1 144 54.9
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 1.1e-38 164.1 153 55.6
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 1.1e-38 164.1 161 54.7
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.4e-38 163.7 164 51.8
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 1.4e-38 163.7 158 55.7
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 2.4e-38 162.9 146 55.5
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 3.2e-38 162.5 165 52.7
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 4.1e-38 162.2 157 52.9
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 7.0e-38 161.4 197 51.3
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 1.6e-37 160.2 147 53.7
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 2.0e-37 159.8 162 50.0
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 2.7e-37 159.5 173 54.9
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.7e-37 159.5 146 54.8
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.7e-37 159.5 146 54.8
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 6.0e-37 158.3 147 53.1
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 6.0e-37 158.3 147 53.1
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 1.0e-36 157.5 154 57.1
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 1.3e-36 157.1 163 53.4
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 2.3e-36 156.4 90 90.0
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 3.0e-36 156.0 147 52.4
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 3.9e-36 155.6 198 47.5
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.5e-35 153.7 187 45.5
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 3.3e-35 152.5 143 56.6
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 4.3e-35 152.1 137 57.7
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 4.3e-35 152.1 136 61.0
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 7.3e-35 151.4 150 54.7
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 7.3e-35 151.4 146 51.4
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 7.3e-35 151.4 146 51.4
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 2.1e-34 149.8 127 64.6
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 2.8e-34 149.4 177 49.2
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 4.7e-34 148.7 138 55.8
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 6.2e-34 148.3 136 59.6
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 1.8e-33 146.7 173 50.9
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 3.1e-33 146.0 156 54.5
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 4.0e-33 145.6 159 47.8
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 1.5e-32 143.7 178 48.9
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 2.0e-32 143.3 200 39.5
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 2.0e-32 143.3 155 48.4
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 1.1e-30 137.5 128 56.2
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 1.9e-30 136.7 109 65.1
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 5.4e-30 135.2 120 59.2
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 1.2e-29 134.0 110 60.9
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 2.1e-29 133.3 142 53.5
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 1.0e-28 131.0 158 48.1
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 4.3e-27 125.6 99 62.6
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 9.5e-27 124.4 164 46.3
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.1e-25 119.4 107 55.1
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 2.6e-24 116.3 93 62.4
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 3.3e-19 99.4 74 59.5
Duzib138G1646 Durio zibethinus HOM05D006977 ORTHO05D008738 1.4e-14 84.0 96 50.0
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 5.6e-11 72.0 166 31.9
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 3.6e-10 69.3 82 47.6
TWI81G0948 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 7.1e-06 55.1 38 63.2


User provided reference genes

Program Settings