Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 0.0e+00 1223.8 632 100.0
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 9.3e-289 996.5 598 87.3
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.6e-251 872.1 465 97.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.5e-233 812.4 595 74.1
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.3e-177 625.9 530 64.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.1e-163 580.1 611 54.8
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.1e-163 580.1 546 59.9
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.9e-163 578.2 546 59.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.3e-162 576.6 530 60.6
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 7.4e-161 571.6 546 59.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 5.8e-158 562.0 609 54.0
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.6e-155 552.4 546 58.1
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.9e-153 547.0 604 53.8
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.4e-143 514.2 610 51.1
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.1e-135 486.1 552 52.9
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 7.2e-132 475.3 564 52.3
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.3e-129 466.5 544 52.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 7.4e-129 465.3 544 52.8
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.1e-127 461.5 617 47.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.4e-127 461.1 605 47.4
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 6.9e-127 458.8 551 49.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.4e-126 456.4 499 53.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.4e-126 456.4 618 46.1
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.4e-124 451.1 616 47.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.4e-124 451.1 602 46.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.1e-121 441.4 605 45.6
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.7e-121 438.3 488 54.9
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 4.8e-120 436.0 605 43.5
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.2e-120 435.3 623 44.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.1e-119 434.9 611 46.5
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 4.1e-119 433.0 476 52.3
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 7.0e-119 432.2 482 53.1
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.6e-118 431.0 567 46.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.6e-118 430.3 483 52.4
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.2e-117 427.2 460 52.0
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 5.5e-116 422.5 475 51.4
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 8.0e-115 418.7 602 44.7
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.3e-114 417.2 553 47.4
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 5.2e-114 416.0 518 48.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 7.5e-113 412.1 547 48.3
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 9.7e-113 411.8 459 52.1
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.8e-112 410.2 502 49.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 2.8e-112 410.2 616 45.1
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 6.3e-112 409.1 622 45.7
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.7e-110 403.7 563 47.4
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 2.9e-109 400.2 617 42.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 3.2e-108 396.7 614 43.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 8.0e-107 392.1 608 44.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 9.8e-105 385.2 500 47.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 9.8e-105 385.2 518 45.2
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.8e-103 380.9 548 46.9
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.0e-102 377.5 453 49.0
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 4.5e-102 376.3 609 43.3
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 7.7e-102 375.6 462 48.3
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.3e-101 374.8 450 49.6
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.7e-101 374.4 546 47.4
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 1.7e-101 374.4 407 52.6
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.1e-100 371.7 617 42.8
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.5e-100 371.3 588 43.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.9e-100 370.9 551 43.4
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.5e-100 370.5 559 41.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 8.0e-99 365.5 473 47.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 8.0e-99 365.5 477 46.8
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.0e-99 365.5 455 47.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.0e-99 365.5 455 47.9
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.3e-98 364.0 576 40.3
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.2e-97 361.7 453 49.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.5e-97 361.3 488 45.1
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 5.7e-97 359.4 404 50.7
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.7e-96 356.7 453 47.0
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 4.9e-96 356.3 480 45.0
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.4e-95 354.8 460 47.4
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 9.2e-95 352.1 543 42.9
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 5.9e-94 349.4 513 43.5
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.0e-93 348.6 521 44.7
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.0e-93 348.6 504 42.1
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.7e-93 347.8 494 44.5
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 2.3e-93 347.4 453 46.8
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.9e-93 347.1 485 45.6
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.9e-93 347.1 490 44.9
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 5.0e-93 346.3 609 39.7
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.0e-93 346.3 494 43.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.0e-93 346.3 491 44.6
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 8.6e-93 345.5 554 40.6
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.9e-92 344.4 564 40.2
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.3e-92 343.6 564 40.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.2e-91 341.7 478 45.4
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.2e-91 341.7 594 40.6
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-91 340.9 453 47.2
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 4.7e-91 339.7 453 47.0
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 6.1e-91 339.3 531 42.4
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.4e-90 338.2 544 44.5
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-90 338.2 543 41.3
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 2.3e-90 337.4 427 47.8
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 5.2e-90 336.3 541 40.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 6.8e-90 335.9 453 45.3
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 8.9e-90 335.5 508 41.9
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.2e-89 335.1 453 45.3
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.4e-89 333.6 420 48.1
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-89 333.6 453 45.0
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 5.8e-89 332.8 479 43.6
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.7e-88 330.1 412 47.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 6.4e-88 329.3 477 44.9
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 6.4e-88 329.3 456 44.1
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.2e-87 327.0 476 44.3
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 4.1e-87 326.6 603 38.6
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-86 325.1 586 38.4
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.0e-85 322.0 491 42.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 3.0e-85 320.5 503 41.0
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.5e-84 317.4 452 43.1
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-84 317.0 374 49.5
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.3e-82 310.8 321 55.8
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.1e-82 310.5 371 48.5
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.4e-81 307.0 458 43.0
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.4e-81 306.6 640 36.1
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.0e-74 283.5 291 56.0
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 8.9e-74 282.3 468 41.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-70 271.9 361 46.8
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.8e-66 256.1 319 48.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 3.8e-64 250.4 428 38.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.9e-64 250.0 477 36.5
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.4e-63 246.5 477 36.1
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.0e-61 242.3 487 37.4
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.0e-61 240.7 422 38.9
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 3.6e-59 233.8 392 41.6
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.7e-54 217.6 417 38.6
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.8e-54 216.1 477 34.0
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.9e-50 203.0 274 47.4
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.5e-49 200.3 411 36.5
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.5e-49 200.3 411 36.5
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.2e-47 194.1 302 41.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 4.6e-46 190.3 195 53.8
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.0e-45 189.1 192 51.6
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.1e-42 179.1 193 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 7.6e-41 172.9 358 36.3
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 2.9e-40 171.0 188 54.8
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-39 169.1 311 39.5
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 4.2e-39 167.2 273 44.0
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 6.0e-38 163.3 487 31.8
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-36 159.1 148 57.4
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 4.3e-36 157.1 141 58.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 9.6e-36 156.0 492 31.7
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 9.0e-34 149.4 218 44.5
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.6e-30 137.1 215 43.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.4e-26 125.6 125 52.8
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.6e-25 121.3 187 41.7
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.3e-21 108.2 195 35.9
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 9.7e-20 102.8 204 35.8
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.6e-17 94.7 75 62.7
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.4e-17 94.4 90 60.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 7.7e-17 93.2 183 40.4
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 6.7e-13 80.1 98 54.1
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 8.8e-13 79.7 120 45.0
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 6.3e-11 73.6 202 32.2
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-09 69.3 64 54.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-09 69.3 66 50.0
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 1.0e-08 66.2 232 28.4
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 1.4e-07 62.4 187 27.8
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 3.6e-06 57.8 87 41.4


User provided reference genes

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