Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.5e-267 924.9 467 100.0
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 1.0e-231 806.6 467 88.2
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 2.3e-228 795.4 467 86.3
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 7.7e-224 780.4 467 85.0
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-215 753.1 467 82.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.7e-215 752.7 467 81.8
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 3.8e-215 751.5 467 81.8
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.9e-214 749.2 467 81.4
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.1e-213 744.2 467 81.2
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 8.0e-213 743.8 467 81.2
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 6.6e-199 697.6 472 76.7
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 5.8e-195 684.5 467 74.3
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.5e-192 675.2 467 74.3
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 1.3e-191 673.3 468 73.9
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 5.0e-191 671.4 468 73.7
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 1.2e-189 666.8 469 73.3
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 1.2e-189 666.8 470 73.8
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 9.8e-187 657.1 467 73.0
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.9e-186 655.6 498 70.3
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 7.1e-185 651.0 467 71.7
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 6.0e-184 647.9 469 71.6
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 3.0e-183 645.6 468 72.2
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 4.7e-181 638.3 429 76.0
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 7.5e-179 630.9 470 71.3
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.7e-178 629.8 469 70.8
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.7e-178 628.6 469 70.8
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.1e-177 627.1 471 70.9
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.2e-176 623.6 470 70.4
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 4.6e-176 621.7 471 70.5
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.3e-175 620.2 469 69.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 5.1e-175 618.2 468 69.2
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.9e-174 616.3 468 70.3
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.5e-174 615.9 467 68.1
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.5e-174 615.9 469 70.1
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.2e-173 613.6 468 68.8
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.5e-171 606.7 467 67.5
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 2.6e-171 605.9 471 68.8
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 7.6e-171 604.4 468 68.2
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 1.3e-170 603.6 468 66.7
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 3.8e-170 602.1 467 67.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 5.4e-169 598.2 494 65.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.2e-168 597.0 468 67.7
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 3.9e-167 592.0 470 66.2
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.1e-166 590.5 490 64.9
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 6.2e-165 584.7 470 65.5
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 5.3e-164 581.6 472 65.5
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 9.0e-164 580.9 470 65.3
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 2.0e-163 579.7 469 65.9
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 2.4e-161 572.8 468 64.1
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 2.4e-161 572.8 492 63.8
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 7.1e-161 571.2 491 63.5
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.1e-160 569.7 476 64.7
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 2.3e-159 566.2 502 61.4
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.1e-159 565.1 524 58.8
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 3.3e-158 562.4 506 61.1
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 9.6e-158 560.8 534 60.3
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 8.1e-157 557.8 481 61.7
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.2e-155 553.9 482 62.7
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.2e-155 553.9 510 62.2
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.5e-155 553.5 511 58.9
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 9.9e-155 550.8 471 63.7
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.6e-152 543.5 481 61.5
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.5e-150 536.2 435 66.9
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 4.8e-149 531.9 497 59.4
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.4e-148 529.6 469 62.0
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 7.1e-145 518.1 478 59.0
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.3e-143 513.8 491 59.3
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 7.4e-142 508.1 518 56.2
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 9.0e-140 501.1 482 59.3
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 2.6e-139 499.6 492 58.3
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.4e-139 499.2 465 59.4
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 2.5e-137 493.0 504 54.4
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 7.1e-137 491.5 480 60.2
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.6e-136 488.8 480 60.0
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 4.6e-136 488.8 470 57.4
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 2.3e-135 486.5 479 57.0
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 5.1e-135 485.3 479 58.9
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.3e-134 482.3 479 58.7
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.3e-133 480.7 482 60.0
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 2.2e-133 479.9 481 59.5
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.3e-133 478.4 466 57.9
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 3.1e-132 476.1 367 68.1
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 3.4e-131 472.6 488 57.8
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 5.9e-131 471.9 482 58.3
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 7.7e-131 471.5 547 53.9
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 2.2e-130 469.9 351 69.2
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 5.0e-130 468.8 350 68.0
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.9e-129 466.8 419 61.6
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 4.2e-129 465.7 482 54.1
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 7.2e-129 464.9 547 53.4
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-126 457.6 494 54.9
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 2.0e-126 456.8 487 55.6
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 9.7e-126 454.5 440 59.1
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 1.8e-124 450.3 536 50.2
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 6.9e-124 448.4 487 54.8
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 7.7e-123 444.9 556 49.5
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 1.0e-122 444.5 511 52.6
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 2.9e-122 443.0 558 48.4
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 8.5e-122 441.4 483 57.3
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.2e-120 437.6 475 53.7
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.6e-118 429.9 516 50.2
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 9.7e-118 427.9 520 49.8
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.5e-115 420.6 489 53.8
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.1e-112 408.7 319 66.5
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-110 404.4 308 68.5
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.7e-109 400.6 435 52.6
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.0e-95 352.8 258 72.5
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.4e-76 291.2 356 47.2
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.2e-69 267.3 220 64.5
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.3e-69 265.4 217 64.1
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.4e-68 264.6 174 73.0
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.4e-68 264.6 264 54.9
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.2e-68 263.5 220 63.6
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.6e-67 261.2 254 56.7
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.3e-65 253.4 219 62.6
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 6.4e-61 239.2 488 36.1
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.9e-52 211.1 367 39.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.6e-51 208.0 483 34.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 4.3e-49 199.9 425 38.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.8e-48 197.2 467 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.3e-45 188.3 461 34.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.6e-40 171.4 468 34.4
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 2.7e-35 154.1 180 48.3
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 4.3e-33 146.7 102 71.6
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.8e-32 143.3 430 31.6
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 4.8e-32 143.3 165 52.1
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.4e-31 141.7 497 29.8
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 7.1e-28 129.4 139 53.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 7.4e-25 119.4 458 29.5
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.1e-24 117.9 116 52.6
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.1e-19 101.3 81 65.4
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 1.0e-10 72.4 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 1.7e-08 65.1 91 49.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 5.3e-07 60.1 185 31.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 9.1e-07 59.3 199 30.7


User provided reference genes

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