Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 7.2e-58 227.3 133 100.0
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 5.1e-48 194.5 133 82.0
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 2.9e-27 125.6 129 60.5
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.0e-24 115.2 141 51.8
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.2e-23 113.6 145 50.3
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.2e-23 113.6 145 50.3
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.4e-23 112.1 144 50.0
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.7e-22 109.8 144 50.0
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 1.2e-20 103.6 133 60.2
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.3e-16 89.4 123 45.5
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 5.2e-16 88.2 131 46.6
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 6.8e-16 87.8 130 43.8
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.0e-15 86.3 125 40.8
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 3.4e-15 85.5 142 41.5
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.4e-15 85.5 132 43.2
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.7e-14 83.2 133 42.9
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 4.9e-14 81.6 68 63.2
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 4.9e-14 81.6 138 38.4
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 6.3e-14 81.3 140 35.7
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 6.3e-14 81.3 148 39.2
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 8.3e-14 80.9 61 67.2
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 1.1e-13 80.5 141 41.1
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.4e-13 80.1 62 66.1
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 4.1e-13 78.6 55 69.1
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 5.4e-13 78.2 133 40.6
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 7.0e-13 77.8 128 41.4
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 7.0e-13 77.8 112 41.1
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 7.0e-13 77.8 129 38.0
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 9.2e-13 77.4 68 63.2
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 1.2e-12 77.0 123 43.1
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.7e-12 75.9 128 42.2
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.7e-12 75.9 140 37.9
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.5e-12 75.5 123 41.5
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.5e-12 75.5 123 41.5
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.5e-12 75.5 123 41.5
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.5e-12 75.5 67 61.2
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 5.9e-12 74.7 52 69.2
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 5.9e-12 74.7 133 48.9
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 1.0e-11 73.9 136 38.2
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.3e-11 73.6 62 64.5
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 1.7e-11 73.2 62 58.1
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 1.7e-11 73.2 60 55.0
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 2.3e-11 72.8 129 40.3
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 2.9e-11 72.4 67 53.7
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 2.9e-11 72.4 62 58.1
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 3.9e-11 72.0 127 38.6
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 5.0e-11 71.6 53 64.2
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 8.6e-11 70.9 67 59.7
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 8.6e-11 70.9 68 52.9
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 1.1e-10 70.5 121 36.4
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.1e-10 70.5 66 56.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.5e-10 70.1 141 35.5
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.5e-10 70.1 61 54.1
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 4.3e-10 68.6 129 38.0
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 4.3e-10 68.6 61 54.1
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 5.6e-10 68.2 59 59.3
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 5.6e-10 68.2 61 55.7
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 7.3e-10 67.8 47 70.2
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 7.3e-10 67.8 47 70.2
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 7.3e-10 67.8 47 70.2
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 7.3e-10 67.8 47 70.2
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 9.5e-10 67.4 59 55.9
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 9.5e-10 67.4 47 68.1
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 9.5e-10 67.4 47 68.1
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 9.5e-10 67.4 47 68.1
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 9.5e-10 67.4 47 68.1
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.2e-09 67.0 47 68.1
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.2e-09 67.0 128 40.6
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.6e-09 66.6 47 68.1
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.6e-09 66.6 52 61.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 1.6e-09 66.6 54 59.3
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 2.1e-09 66.2 137 34.3
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.1e-09 66.2 68 48.5
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 2.8e-09 65.9 47 66.0
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 2.8e-09 65.9 47 66.0
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 2.8e-09 65.9 121 35.5
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.8e-09 65.9 122 36.9
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 3.6e-09 65.5 137 38.7
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 3.6e-09 65.5 66 48.5
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 3.6e-09 65.5 47 68.1
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 4.7e-09 65.1 135 34.1
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 6.1e-09 64.7 58 56.9
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 6.1e-09 64.7 47 66.0
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 6.1e-09 64.7 53 64.2
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 8.0e-09 64.3 61 54.1
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 8.0e-09 64.3 128 35.2
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 8.0e-09 64.3 59 57.6
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 1.0e-08 63.9 67 47.8
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.4e-08 63.5 53 56.6
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.4e-08 63.5 53 56.6
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.4e-08 63.5 53 56.6
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.4e-08 63.5 50 56.0
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 1.4e-08 63.5 54 51.9
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 2.3e-08 62.8 47 63.8
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 2.3e-08 62.8 136 35.3
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 4.0e-08 62.0 59 57.6
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 4.0e-08 62.0 54 55.6
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 5.2e-08 61.6 49 65.3
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 5.2e-08 61.6 49 65.3
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 8.9e-08 60.8 57 52.6
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 1.2e-07 60.5 49 65.3
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.2e-07 60.5 59 54.2
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.5e-07 60.1 59 49.2
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 5.8e-07 58.2 63 46.0
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 7.5e-07 57.8 55 45.5
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 1.3e-06 57.0 49 63.3
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.3e-06 57.0 127 33.1
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 1.7e-06 56.6 50 48.0
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.7e-06 56.6 63 46.0
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 1.7e-06 56.6 127 32.3
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.7e-06 56.6 63 46.0
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 2.2e-06 56.2 99 36.4
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 3.7e-06 55.5 131 30.5
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 4.9e-06 55.1 55 47.3
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 6.4e-06 54.7 54 53.7
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 8.3e-06 54.3 54 55.6
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 8.3e-06 54.3 54 50.0


User provided reference genes

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