Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.3e-99 365.5 184 100.0
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 8.6e-78 293.9 184 83.7
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.1e-75 285.4 180 80.6
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 8.9e-75 283.9 174 82.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 7.6e-74 280.8 180 78.3
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.6e-74 280.8 181 80.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 7.6e-74 280.8 181 77.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.9e-73 278.9 180 78.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.9e-73 278.1 181 77.9
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.5e-71 271.9 180 76.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-69 266.9 181 75.7
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.5e-69 265.8 183 73.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 9.6e-69 263.8 170 78.8
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 9.6e-69 263.8 183 73.2
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 4.7e-68 261.5 183 73.8
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 6.2e-68 261.2 184 72.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 8.1e-68 260.8 183 72.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.1e-67 260.4 183 72.7
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.8e-67 259.6 184 71.2
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.8e-67 259.6 185 70.3
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.8e-67 259.6 185 71.9
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.0e-67 258.5 184 71.7
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.2e-67 258.1 181 75.1
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 5.2e-67 258.1 191 69.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 6.8e-67 257.7 183 71.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.5e-66 256.5 184 71.2
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.0e-66 256.1 191 70.7
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.6e-66 255.8 180 73.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.4e-66 255.4 184 71.7
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.4e-66 255.4 185 71.4
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 7.6e-66 254.2 186 71.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.7e-65 253.1 181 71.3
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.7e-65 253.1 183 69.9
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.9e-65 252.3 172 72.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.8e-65 251.9 181 71.3
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.8e-65 251.9 187 70.1
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.8e-65 251.9 183 69.4
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 4.9e-65 251.5 173 72.3
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.4e-64 250.0 182 69.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.4e-64 250.0 181 69.6
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.4e-64 250.0 183 68.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.9e-64 249.6 188 68.6
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.2e-64 248.8 181 69.1
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 4.2e-64 248.4 181 69.1
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-64 248.4 212 63.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-64 248.4 212 63.7
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-64 248.4 212 63.7
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 68.3
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 68.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.4e-64 248.1 181 69.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 72.1
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 68.3
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 68.3
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.4e-64 248.1 183 68.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 7.1e-64 247.7 183 69.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.2e-63 246.9 207 63.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.6e-63 246.5 183 68.3
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.6e-63 246.5 181 68.5
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.6e-63 246.5 183 68.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.1e-63 246.1 182 67.6
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.7e-63 245.7 183 66.7
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.7e-63 245.7 183 66.1
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.7e-63 245.7 173 72.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.5e-63 245.4 182 69.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.5e-63 245.4 183 66.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 4.6e-63 245.0 182 69.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.6e-63 245.0 181 67.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 6.0e-63 244.6 183 68.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.0e-62 243.8 183 67.2
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 3.0e-62 242.3 181 68.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 3.9e-62 241.9 181 69.6
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 6.6e-62 241.1 185 66.5
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.6e-62 241.1 181 66.9
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 6.6e-62 241.1 183 68.9
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.7e-62 240.7 180 67.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 8.7e-62 240.7 183 65.6
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.5e-61 240.0 181 66.9
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.5e-61 240.0 183 68.3
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.5e-61 240.0 183 65.0
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.5e-61 239.2 181 66.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.5e-61 239.2 181 66.3
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 3.3e-61 238.8 171 72.5
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 4.3e-61 238.4 181 65.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 5.6e-61 238.0 171 70.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-60 236.9 180 68.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.6e-60 236.5 181 65.7
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 3.6e-60 235.3 181 65.7
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.8e-60 235.0 187 67.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 6.2e-60 234.6 182 66.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 8.1e-60 234.2 182 67.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.1e-59 233.8 178 65.2
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.4e-59 233.4 181 66.9
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 5.3e-59 231.5 181 64.6
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 6.9e-59 231.1 181 65.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 6.9e-59 231.1 181 65.2
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-58 229.2 214 59.3
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 7.6e-58 227.6 181 64.1
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.3e-57 226.9 183 62.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.7e-57 226.5 180 63.9
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.9e-57 225.7 188 63.8
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-57 225.3 171 66.7
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.9e-57 224.9 188 62.2
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.4e-57 224.6 171 66.7
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.4e-57 224.6 171 66.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.2e-56 221.9 262 51.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 4.2e-56 221.9 176 63.1
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.6e-55 219.9 182 63.2
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.6e-55 219.9 239 52.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.5e-55 218.8 219 56.2
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.9e-55 217.6 149 73.2
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 7.9e-55 217.6 216 54.6
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.1e-53 213.8 182 59.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.4e-51 206.8 156 67.9
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 2.4e-51 206.1 191 60.7
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.9e-48 196.4 182 57.7
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 7.4e-45 184.5 130 69.2
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.2e-41 172.9 180 52.8
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 6.5e-41 171.4 183 55.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-40 169.9 121 68.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.9e-37 159.8 125 63.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.1e-36 156.4 114 66.7
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.7e-36 155.6 122 65.6
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 9.0e-35 151.0 103 74.8
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-34 149.4 100 73.0
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.5e-34 148.7 152 48.7
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 7.6e-34 147.9 124 57.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.3e-33 147.1 109 68.8
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.4e-32 143.7 99 70.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 5.1e-30 135.2 147 43.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.1e-29 134.0 108 58.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.2e-28 129.8 110 60.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.4e-27 127.1 100 61.0
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.1e-23 113.2 105 58.1
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-23 111.7 84 66.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 6.1e-23 111.7 84 66.7
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.8e-22 110.2 59 89.8
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.5e-21 106.3 59 86.4
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.5e-21 106.3 105 54.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.8e-20 102.8 73 72.6
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 6.3e-20 101.7 65 75.4
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.4e-19 100.5 59 81.4
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.4e-19 99.8 124 36.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.2e-18 97.4 118 39.0
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.5e-18 97.1 58 77.6
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.4e-16 90.5 116 37.1
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 5.5e-16 88.6 91 46.2
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-15 87.4 104 51.9
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.8e-14 83.6 148 35.8
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.9e-14 82.4 118 36.4
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 6.7e-14 81.6 47 78.7
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 3.0e-06 56.2 32 84.4
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 5.2e-06 55.5 34 79.4


User provided reference genes

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