Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 1.9e-172 609.0 296 100.0
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 7.9e-81 304.7 358 53.9
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 1.0e-80 304.3 379 51.5
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 6.7e-80 301.6 378 50.8
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.4e-74 283.9 377 48.8
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 6.0e-73 278.5 378 48.7
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.5e-71 273.9 394 45.9
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 5.6e-71 271.9 373 48.3
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 7.4e-71 271.6 378 46.8
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 9.6e-71 271.2 395 45.6
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 2.6e-68 263.1 375 46.1
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.2e-66 255.8 336 49.1
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 1.2e-65 254.2 378 44.7
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 1.2e-65 254.2 377 42.4
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 1.6e-65 253.8 370 45.1
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 2.7e-65 253.1 372 45.2
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 2.7e-65 253.1 378 44.7
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.7e-65 253.1 395 44.1
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 2.7e-65 253.1 373 43.7
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 3.5e-65 252.7 373 45.0
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 6.0e-65 251.9 374 43.6
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 7.9e-65 251.5 377 44.3
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.3e-64 250.0 378 43.7
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 2.3e-64 250.0 378 43.7
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 3.0e-64 249.6 377 43.8
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 3.0e-64 249.6 377 42.7
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 3.9e-64 249.2 373 45.0
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 6.7e-64 248.4 371 43.9
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.1e-63 247.7 372 44.9
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 2.5e-63 246.5 378 43.7
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 3.3e-63 246.1 377 43.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 4.3e-63 245.7 377 43.0
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 7.4e-63 245.0 381 42.8
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.6e-62 243.8 372 44.1
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 2.8e-62 243.0 379 41.4
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 4.8e-62 242.3 365 42.2
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 4.8e-62 242.3 375 44.0
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 6.3e-62 241.9 373 44.2
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 8.2e-62 241.5 377 42.7
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 8.2e-62 241.5 377 42.7
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.4e-61 240.7 376 44.7
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.8e-61 240.4 378 44.2
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.4e-61 240.0 374 44.7
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 3.1e-61 239.6 378 43.7
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 6.9e-61 238.4 377 44.0
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.5e-60 237.3 374 44.4
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.5e-60 237.3 378 42.6
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.0e-60 236.9 368 44.6
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 2.0e-60 236.9 381 41.7
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.0e-60 236.9 361 45.2
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 3.4e-60 236.1 393 41.7
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 1.3e-59 234.2 379 43.5
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 1.7e-59 233.8 377 41.1
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.7e-59 233.8 379 43.5
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 5.0e-59 232.3 374 42.2
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 6.5e-59 231.9 373 43.4
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 8.5e-59 231.5 313 47.9
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 8.5e-59 231.5 368 41.0
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 8.5e-59 231.5 382 43.5
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 1.1e-58 231.1 373 44.5
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.4e-58 230.7 382 43.5
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 2.5e-58 229.9 381 41.5
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 2.5e-58 229.9 372 43.0
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 3.2e-58 229.6 377 42.4
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 4.2e-58 229.2 376 43.4
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 9.3e-58 228.0 377 42.7
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 1.6e-57 227.3 367 43.1
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 1.6e-57 227.3 371 41.2
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 3.6e-57 226.1 376 43.1
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 4.6e-57 225.7 371 42.0
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 6.1e-57 225.3 376 41.2
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 6.1e-57 225.3 378 42.1
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 1.3e-56 224.2 376 42.8
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 1.8e-56 223.8 379 39.3
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 3.0e-56 223.0 378 41.8
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 3.0e-56 223.0 378 41.3
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 3.0e-56 223.0 367 43.1
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 3.0e-56 223.0 378 41.5
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 3.0e-56 223.0 376 42.6
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 6.7e-56 221.9 370 39.7
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 6.7e-56 221.9 390 40.3
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 1.5e-55 220.7 368 42.9
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 2.5e-55 219.9 368 41.8
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 5.7e-55 218.8 366 42.6
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 7.4e-55 218.4 372 41.1
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 7.4e-55 218.4 373 41.0
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 7.4e-55 218.4 379 40.6
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 9.7e-55 218.0 324 46.0
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 1.6e-54 217.2 401 39.9
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 2.2e-54 216.9 373 40.8
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 2.8e-54 216.5 373 39.9
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.8e-54 216.5 372 40.3
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 1.1e-53 214.5 342 43.0
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 1.4e-53 214.2 371 40.4
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 3.1e-53 213.0 369 39.8
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 3.1e-53 213.0 366 39.6
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.2e-52 211.1 371 42.0
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.5e-52 210.7 369 40.1
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 1.0e-51 208.0 408 38.0
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 1.3e-51 207.6 363 39.9
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 1.7e-51 207.2 380 38.9
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 1.1e-50 204.5 367 39.2
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 2.5e-50 203.4 374 38.2
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 2.5e-50 203.4 389 37.8
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 3.2e-50 203.0 363 39.1
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 4.2e-50 202.6 366 38.5
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 9.4e-50 201.4 362 39.2
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 1.2e-49 201.1 363 38.6
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 1.2e-49 201.1 363 38.6
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.2e-49 201.1 365 38.4
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.6e-49 200.7 366 38.8
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 1.6e-49 200.7 363 39.1
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 1.0e-48 198.0 362 38.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 1.0e-48 198.0 362 38.1
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 1.8e-48 197.2 387 35.4
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 2.0e-44 183.7 355 37.5
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 2.9e-43 179.9 368 36.4
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 5.5e-42 175.6 316 40.8
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 9.4e-42 174.9 191 55.5
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.4e-37 160.2 381 33.9
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 3.1e-37 159.8 340 35.6
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 6.5e-35 152.1 183 47.0
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 1.2e-33 147.9 385 29.9
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 5.2e-32 142.5 137 55.5
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 7.0e-29 132.1 260 36.9
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.4e-24 117.9 375 30.1
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 4.0e-24 116.3 194 40.2
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 5.2e-24 115.9 213 35.7
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 3.1e-21 106.7 363 28.7
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.7e-19 100.9 82 59.8
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 7.2e-18 95.5 176 36.9
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 8.0e-17 92.0 73 68.5
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 4.4e-15 86.3 260 30.4
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 6.3e-14 82.4 200 30.5
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 5.6e-10 69.3 70 54.3
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 8.9e-08 62.0 85 45.9
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.2e-07 61.6 164 32.3
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 1.7e-06 57.8 61 54.1


User provided reference genes

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