Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 7.4e-143 510.8 303 100.0
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 7.5e-111 404.4 258 96.5
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 6.3e-102 374.8 319 76.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.8e-101 373.2 258 89.1
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 8.8e-96 354.4 317 69.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.0e-95 353.2 310 73.9
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.7e-94 350.1 315 68.9
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 2.2e-94 349.7 315 73.3
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 6.3e-94 348.2 316 71.5
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.8e-93 346.7 318 71.7
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.4e-93 346.3 318 71.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 2.4e-93 346.3 318 71.7
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 7.0e-93 344.7 319 71.8
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.7e-92 342.8 318 70.8
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.8e-92 341.3 318 70.4
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 7.8e-92 341.3 320 70.0
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 7.8e-92 341.3 316 70.9
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.0e-91 340.9 319 67.4
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.7e-91 340.1 316 70.3
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 1.7e-91 340.1 316 70.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.9e-91 339.3 319 67.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.9e-91 339.3 319 67.1
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 3.8e-91 339.0 313 70.9
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 5.0e-91 338.6 316 70.9
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 5.0e-91 338.6 316 70.9
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 5.0e-91 338.6 319 69.9
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 6.6e-91 338.2 320 70.9
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 8.6e-91 337.8 318 69.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.1e-90 337.4 321 66.4
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.5e-90 337.0 260 81.9
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.5e-90 337.0 318 67.6
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.9e-90 336.7 319 69.9
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.5e-90 336.3 305 72.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.5e-90 336.3 317 70.0
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.3e-90 335.9 318 67.3
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 4.3e-90 335.5 313 70.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 5.6e-90 335.1 318 67.3
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 9.5e-90 334.3 260 82.3
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.2e-89 334.0 317 69.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.8e-89 332.8 319 67.7
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 3.6e-89 332.4 305 71.8
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.6e-89 332.4 317 69.1
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.1e-89 331.6 260 80.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-88 330.9 319 67.4
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.8e-88 330.1 319 68.7
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.8e-88 330.1 319 69.9
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 3.0e-88 329.3 258 81.0
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 5.2e-88 328.6 261 78.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.2e-87 327.4 305 70.5
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 2.0e-87 326.6 305 69.8
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.7e-87 325.1 333 64.9
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 5.7e-87 325.1 261 80.1
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 7.5e-87 324.7 313 67.7
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 7.5e-87 324.7 325 63.1
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 9.8e-87 324.3 253 79.8
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 9.8e-87 324.3 305 69.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.3e-86 323.9 316 69.0
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.7e-86 323.6 320 68.8
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 2.2e-86 323.2 258 75.2
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.9e-86 322.8 286 74.8
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 4.9e-86 322.0 317 65.3
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.9e-86 322.0 315 67.6
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 4.9e-86 322.0 317 67.2
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 6.4e-86 321.6 256 80.5
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.1e-85 320.9 316 67.1
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.1e-85 320.9 316 67.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.8e-85 320.1 305 70.2
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.8e-85 320.1 316 67.1
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.2e-85 319.3 266 77.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 9.2e-85 317.8 305 69.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.2e-84 317.4 318 63.8
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.2e-84 317.4 246 81.7
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.0e-84 316.6 320 68.4
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.7e-84 316.2 315 63.2
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.5e-84 315.8 305 68.9
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 3.5e-84 315.8 305 70.2
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.0e-83 314.3 318 63.5
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-83 313.2 318 62.9
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 3.9e-83 312.4 317 67.2
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 5.0e-83 312.0 315 62.5
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 5.0e-83 312.0 305 69.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 3.3e-82 309.3 313 62.6
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 3.3e-82 309.3 318 62.6
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-82 308.9 319 62.1
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 4.3e-82 308.9 319 62.1
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 4.3e-82 308.9 319 62.1
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 4.3e-82 308.9 304 64.8
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 5.6e-82 308.5 316 67.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 4.7e-81 305.4 265 60.4
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 8.9e-80 301.2 319 61.1
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 8.9e-80 301.2 319 61.1
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 4.4e-79 298.9 312 60.3
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 5.8e-79 298.5 293 70.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 7.8e-76 288.1 247 75.7
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.0e-75 287.7 335 59.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 8.6e-75 284.6 253 72.7
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.9e-74 283.5 256 68.0
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 4.3e-74 282.3 245 74.7
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.1e-72 277.7 306 59.8
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 5.2e-72 275.4 321 62.9
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.8e-72 275.0 436 49.3
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.5e-71 273.9 321 62.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-71 273.5 321 62.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.6e-71 273.1 267 70.8
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.4e-71 272.7 315 55.6
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 9.9e-71 271.2 302 57.9
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.3e-70 270.8 346 54.3
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.9e-70 269.6 363 52.6
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.9e-70 269.6 306 64.1
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.2e-68 264.2 318 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.6e-68 263.8 317 57.4
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.7e-68 263.1 256 62.9
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 4.6e-68 262.3 320 51.6
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.9e-66 256.9 321 47.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-66 256.9 248 63.3
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.9e-66 256.9 248 63.3
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 3.3e-66 256.1 248 63.3
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-66 255.8 329 53.2
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.3e-66 255.8 256 70.7
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.3e-66 255.0 258 62.8
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-64 250.0 320 54.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.5e-63 247.3 352 49.4
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.7e-62 243.8 305 57.4
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.4e-61 240.7 246 65.9
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-61 239.6 297 50.8
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-59 233.8 253 57.7
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.5e-58 229.9 253 57.3
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.5e-58 229.9 291 56.7
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 3.6e-57 226.1 309 50.2
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.7e-57 225.7 270 50.0
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.1e-53 214.5 247 55.5
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.9e-53 213.8 256 52.3
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 6.0e-52 208.8 250 60.0
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 3.0e-51 206.5 255 56.5
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.9e-50 203.8 359 39.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.5e-47 194.1 210 70.5
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-47 192.6 253 43.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-46 191.0 245 43.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.3e-43 180.3 255 47.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.5e-42 176.8 125 68.0
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.6e-39 166.8 160 73.8
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 3.9e-35 152.9 147 52.4
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 5.8e-31 139.0 137 55.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.6e-28 131.0 151 48.3
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.1e-26 124.8 180 43.9
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.7e-22 110.9 54 90.7
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 3.3e-18 96.7 76 63.2
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 4.3e-18 96.3 88 53.4
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 7.4e-18 95.5 271 31.4
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 2.8e-17 93.6 93 57.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 2.6e-15 87.0 120 61.7
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 4.2e-13 79.7 77 49.4
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 5.5e-13 79.3 151 31.8
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 5.5e-13 79.3 84 52.4
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 5.5e-13 79.3 84 52.4
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 3.9e-11 73.2 46 65.2
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.8e-08 64.3 113 53.1
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 4.1e-08 63.2 82 43.9
Cre08.g367650 Chlamydomonas reinhardtii HOM05D009278 ORTHO05D002685 3.8e-06 56.6 47 55.3


User provided reference genes

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