Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 5.4e-212 740.7 370 100.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 9.2e-188 660.2 370 88.6
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.3e-154 549.3 371 74.1
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.0e-150 536.2 372 73.4
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.2e-149 532.7 370 70.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.9e-149 532.3 372 72.8
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.9e-149 532.3 372 72.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.9e-149 532.3 372 72.8
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.9e-149 531.6 370 70.8
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-149 531.2 372 72.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.4e-148 530.0 370 70.8
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.4e-148 530.0 370 71.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.1e-146 521.5 372 71.8
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 4.8e-144 515.0 370 69.7
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.8e-138 496.5 370 69.2
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.8e-138 496.5 377 65.8
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 5.1e-138 495.0 370 67.6
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 6.7e-138 494.6 370 67.0
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.9e-137 493.0 370 67.0
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.7e-136 488.8 369 64.8
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.8e-135 486.5 373 65.7
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 4.1e-135 485.3 372 64.5
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 6.9e-135 484.6 373 63.5
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 2.6e-134 482.6 372 64.0
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.3e-133 480.3 370 65.7
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.3e-133 480.3 375 65.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.2e-133 479.6 375 64.0
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 5.0e-133 478.4 373 64.6
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-132 477.2 369 63.1
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 1.9e-132 476.5 376 65.4
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 3.6e-131 472.2 370 63.2
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 3.6e-131 472.2 377 63.4
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 4.6e-131 471.9 370 65.4
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 6.1e-131 471.5 362 66.3
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.1e-129 467.2 372 63.4
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.0e-129 466.5 373 63.3
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 3.3e-129 465.7 374 63.1
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.3e-129 465.3 380 61.6
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 5.7e-129 464.9 369 63.7
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.3e-128 463.8 387 61.8
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.7e-128 463.4 370 62.2
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.7e-128 463.4 380 63.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.8e-128 462.6 375 62.4
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.7e-128 462.2 371 62.8
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.1e-127 460.7 375 63.5
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 3.1e-127 459.1 375 62.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-126 457.2 379 61.5
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.5e-126 456.8 372 62.9
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.0e-126 456.4 375 61.3
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-125 454.1 379 61.2
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-125 453.4 379 60.9
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.1e-124 450.7 377 59.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.9e-124 449.9 376 60.1
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.6e-123 446.8 376 59.3
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 4.7e-123 445.3 376 58.5
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.0e-122 444.1 377 59.4
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.4e-122 443.7 372 59.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.0e-122 442.6 381 60.9
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 5.1e-122 441.8 377 58.6
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 5.1e-122 441.8 372 59.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 5.1e-122 441.8 376 59.3
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.7e-122 441.4 377 58.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 4.4e-121 438.7 370 59.7
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 4.4e-121 438.7 372 58.9
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 4.4e-121 438.7 372 58.9
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.7e-120 435.6 375 61.6
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 6.3e-120 434.9 373 58.7
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.4e-119 433.7 376 58.0
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.1e-119 432.6 355 62.5
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.9e-116 423.3 371 61.2
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-116 422.9 381 57.2
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.2e-116 421.4 381 57.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.1e-115 418.3 381 57.2
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.8e-114 416.8 377 59.9
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.1e-113 414.1 372 59.1
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.1e-113 414.1 381 56.7
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 4.4e-113 412.1 370 60.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.1e-111 406.0 371 56.9
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.0e-110 403.3 376 56.9
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 5.9e-110 401.7 379 57.8
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.0e-109 401.0 385 57.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.7e-109 400.2 383 57.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.9e-109 399.4 379 57.3
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.5e-109 398.3 389 55.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.5e-108 397.1 376 56.9
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 4.2e-108 395.6 372 56.2
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.5e-108 395.2 373 57.4
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 7.2e-108 394.8 368 57.6
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 9.4e-108 394.4 375 57.6
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-107 394.0 376 52.1
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-107 393.7 383 56.7
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.4e-106 390.6 371 58.2
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.3e-106 389.8 378 55.3
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.0e-105 386.7 357 55.5
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.7e-105 385.2 363 52.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 7.5e-105 384.8 362 57.5
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 3.1e-103 379.4 389 53.2
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 7.0e-103 378.3 378 54.2
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 8.5e-101 371.3 380 53.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-100 370.5 370 50.3
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.5e-100 368.6 375 53.9
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.7e-96 357.1 372 52.7
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 3.1e-95 352.8 371 52.3
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.1e-95 352.4 340 55.0
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.2e-94 350.9 340 54.7
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.9e-88 329.7 378 47.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 4.6e-86 322.4 378 47.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.0e-85 321.2 463 41.9
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.5e-84 317.4 298 53.7
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.2e-83 314.3 285 58.2
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 4.9e-80 302.4 376 43.9
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.4e-80 302.0 369 44.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.4e-79 300.1 357 46.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.0e-69 266.5 349 43.3
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.8e-66 257.3 347 42.9
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 3.1e-66 256.5 379 38.8
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.2e-64 250.4 376 40.2
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 7.3e-60 235.3 229 56.3
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 5.8e-57 225.7 205 56.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 5.6e-52 209.1 206 49.5
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.1e-50 203.4 186 56.5
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.7e-48 197.6 174 57.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.9e-47 194.1 288 38.9
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.1e-43 180.6 290 37.9
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 3.6e-43 179.9 167 56.3
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 4.0e-42 176.4 300 34.3
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.2e-38 164.9 255 45.1
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 7.9e-38 162.2 148 54.7
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.3e-36 156.8 132 56.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 4.8e-35 152.9 132 55.3
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-32 145.2 132 55.3
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 6.0e-30 136.0 104 65.4
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 9.6e-28 128.6 92 75.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.4e-25 120.2 116 53.4
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.0e-24 118.6 99 53.5
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.9e-24 117.1 95 54.7
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.5e-24 115.9 95 53.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.5e-22 110.2 95 52.6
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-21 106.3 100 50.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.6e-19 101.3 286 26.2
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-17 94.7 94 52.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-17 94.7 94 52.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.9e-15 87.8 72 52.8
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.0e-13 82.0 108 46.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.8e-13 81.3 78 55.1
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.9e-13 80.1 79 60.8
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 7.4e-12 75.9 58 65.5
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.2e-11 74.3 65 61.5
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.8e-11 73.2 59 64.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 5.0e-08 63.2 45 71.1


User provided reference genes

Program Settings