Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 5.6e-127 457.6 227 100.0
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 7.9e-65 251.1 225 64.9
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 7.5e-31 138.3 232 43.5
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.6e-25 120.6 215 41.9
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 3.6e-25 119.4 215 41.9
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 8.0e-25 118.2 223 41.7
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.0e-24 115.9 221 39.4
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.7e-22 109.4 226 35.4
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 4.9e-22 109.0 217 37.3
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 6.3e-22 108.6 222 38.3
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 6.3e-22 108.6 207 38.6
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.8e-21 107.1 221 40.3
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 9.1e-21 104.8 208 38.0
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.2e-20 104.4 218 36.2
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.7e-20 103.2 219 39.3
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 4.5e-20 102.4 218 37.6
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 4.5e-20 102.4 220 35.0
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.7e-19 100.5 196 41.3
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.3e-19 100.1 211 33.6
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 5.0e-19 99.0 201 34.8
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.3e-18 95.9 120 53.3
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 4.3e-18 95.9 212 34.0
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 8.0e-17 91.7 120 50.0
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.8e-16 90.5 112 49.1
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.0e-16 89.7 125 47.2
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 3.0e-16 89.7 219 34.2
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.0e-16 89.7 205 33.2
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 5.2e-16 89.0 214 33.2
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 2.0e-15 87.0 207 34.3
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.6e-15 86.7 196 34.7
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 3.4e-15 86.3 222 31.5
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.4e-15 86.3 99 52.5
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 3.4e-15 86.3 203 33.5
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 4.4e-15 85.9 99 52.5
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.4e-15 85.9 107 52.3
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 1.3e-14 84.3 99 52.5
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.3e-14 84.3 205 32.7
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 1.7e-14 84.0 224 33.9
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 2.2e-14 83.6 198 35.4
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 3.7e-14 82.8 108 48.1
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 3.7e-14 82.8 212 36.3
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.8e-13 80.5 215 32.6
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 3.2e-13 79.7 96 51.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 3.2e-13 79.7 112 46.4
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 4.1e-13 79.3 202 35.6
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 4.1e-13 79.3 202 35.6
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 7.0e-13 78.6 218 28.9
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 9.2e-13 78.2 112 42.9
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.0e-12 77.0 202 30.7
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.7e-12 76.6 102 46.1
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.7e-12 76.6 99 45.5
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 7.8e-12 75.1 111 44.1
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 7.8e-12 75.1 189 34.4
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.0e-11 74.7 223 29.6
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.7e-11 73.9 95 46.3
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.3e-11 73.6 111 44.1
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 3.9e-11 72.8 96 45.8
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 3.9e-11 72.8 96 45.8
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 3.9e-11 72.8 96 44.8
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.0e-11 72.4 97 45.4
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 6.6e-11 72.0 98 44.9
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.1e-10 71.2 96 43.8
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.1e-10 71.2 96 46.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.5e-10 70.9 133 39.1
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 2.5e-10 70.1 96 43.8
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 2.5e-10 70.1 96 43.8
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 2.5e-10 70.1 96 43.8
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.5e-10 70.1 96 45.8
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 3.3e-10 69.7 98 44.9
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 7.3e-10 68.6 99 45.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.1e-09 67.0 100 40.0
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.8e-09 66.6 146 34.9
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 3.6e-09 66.2 115 38.3
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 3.6e-09 66.2 97 40.2
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 6.2e-09 65.5 152 33.6
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.0e-08 64.7 96 39.6
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.3e-08 63.5 104 40.4
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 3.1e-08 63.2 184 32.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 6.8e-08 62.0 113 41.6
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 8.9e-08 61.6 94 40.4
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.2e-07 61.2 110 37.3
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.2e-07 61.2 88 47.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.5e-07 60.8 100 41.0
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 2.0e-07 60.5 106 41.5
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.6e-07 60.1 101 40.6
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.6e-07 60.1 186 32.3
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 4.4e-07 59.3 111 35.1
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 5.8e-07 58.9 233 26.6
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 7.5e-07 58.5 99 39.4
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 7.5e-07 58.5 120 34.2
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 7.5e-07 58.5 99 39.4
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 9.8e-07 58.2 102 38.2
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-06 57.4 100 38.0
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 1.7e-06 57.4 100 38.0
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 1.7e-06 57.4 100 38.0
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.7e-06 57.4 100 38.0
Lsat_1_v5_gn_3_63900 Lactuca sativa HOM05D008015 ORTHO05D009180 1.7e-06 57.4 101 33.7


User provided reference genes

Program Settings