Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.5e-240 835.9 462 100.0
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 1.3e-218 763.1 462 91.3
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 6.9e-201 704.1 462 86.8
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.1e-181 639.4 462 79.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.4e-180 636.7 462 79.0
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.4e-180 636.7 462 78.6
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.3e-180 636.0 462 78.6
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.3e-178 630.2 462 78.6
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 2.2e-162 576.2 463 73.2
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 4.3e-158 562.0 460 70.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 1.6e-157 560.1 457 73.3
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 9.2e-153 544.3 462 71.6
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 2.7e-152 542.7 462 70.8
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 6.0e-152 541.6 462 71.0
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 5.0e-151 538.5 452 72.1
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 5.0e-151 538.5 468 68.4
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 2.5e-150 536.2 459 70.2
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.5e-150 536.2 461 71.4
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 4.7e-149 531.9 471 68.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.3e-148 529.6 461 69.8
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 7.8e-144 514.6 455 69.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 2.5e-142 509.6 462 68.6
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 9.5e-142 507.7 456 66.9
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 8.1e-141 504.6 460 66.7
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.1e-140 504.2 456 68.0
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 6.8e-140 501.5 462 67.1
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.3e-138 497.3 460 66.3
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.1e-137 494.2 466 64.6
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.2e-136 490.7 444 67.8
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 3.5e-136 489.2 444 67.8
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.5e-134 483.8 444 67.3
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 1.2e-133 480.7 461 65.1
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.6e-133 480.3 429 67.4
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 2.6e-131 473.0 459 64.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 9.9e-131 471.1 456 62.7
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.7e-130 470.3 390 71.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 2.2e-130 469.9 430 65.1
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 3.8e-130 469.2 460 62.6
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.4e-130 468.4 454 64.8
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 8.4e-130 468.0 463 62.6
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.6e-128 463.8 454 64.5
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.7e-128 463.0 496 57.9
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.9e-127 459.1 435 65.3
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 6.6e-127 458.4 342 79.2
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 4.3e-126 455.7 461 62.0
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 2.1e-125 453.4 460 61.5
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 6.2e-125 451.8 491 59.5
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 8.1e-125 451.4 458 63.3
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 8.1e-125 451.4 436 65.6
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 6.9e-124 448.4 444 63.5
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.5e-123 445.7 464 62.9
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.7e-122 443.7 432 65.3
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.9e-122 443.0 464 60.6
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 6.4e-122 441.8 451 61.2
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 8.4e-122 441.4 438 63.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 4.2e-121 439.1 433 62.6
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 5.4e-121 438.7 461 60.3
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 4.6e-120 435.6 439 62.6
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 6.0e-120 435.3 437 62.5
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 6.0e-120 435.3 394 68.8
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.3e-119 433.3 447 64.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.0e-119 433.0 439 62.2
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.5e-118 429.9 460 59.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 5.6e-118 428.7 458 63.3
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 5.6e-118 428.7 428 62.9
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 7.4e-118 428.3 391 70.6
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 3.6e-117 426.0 460 61.7
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 4.8e-117 425.6 441 57.8
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 4.8e-117 425.6 439 62.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.1e-116 424.5 382 69.9
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.1e-116 424.5 380 70.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.5e-115 420.6 412 67.2
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.2e-114 416.8 447 63.1
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 2.9e-114 416.4 413 67.3
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 4.9e-114 415.6 427 60.9
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-113 414.5 373 71.6
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.4e-113 414.1 385 69.1
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 5.5e-113 412.1 448 60.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 5.5e-113 412.1 417 63.5
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.7e-112 409.8 374 71.4
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.7e-112 409.8 374 71.4
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 7.9e-112 408.3 327 75.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.3e-111 406.8 382 68.8
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.3e-111 406.8 382 68.8
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.1e-111 405.6 383 68.1
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.8e-109 399.8 458 58.1
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 5.3e-108 395.6 359 70.8
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.5e-107 392.5 300 69.7
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.0e-106 391.3 360 70.3
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.0e-106 391.3 378 64.3
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.2e-106 390.2 406 60.6
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.5e-105 386.7 383 63.7
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.1e-105 385.2 416 60.3
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.2e-104 384.4 384 63.8
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 6.0e-104 382.1 445 57.1
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 7.4e-102 375.2 259 78.8
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 4.8e-101 372.5 328 70.7
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 5.3e-100 369.0 330 67.6
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.9e-95 352.8 440 56.4
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 3.3e-94 349.7 451 54.5
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.5e-91 340.9 415 55.4
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 4.2e-89 332.8 248 71.8
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.7e-88 330.1 228 80.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 7.9e-88 328.6 306 70.9
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.1e-76 290.0 203 77.3
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 7.2e-73 278.9 276 68.5
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.2e-72 278.1 447 42.5
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 7.7e-67 258.8 349 53.6
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.3e-61 241.5 327 52.0
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.9e-57 227.6 412 42.0
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 8.0e-56 222.2 303 53.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 9.8e-54 215.3 237 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.9e-53 213.0 317 47.6
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 8.3e-53 212.2 239 62.8
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.8e-52 211.1 134 84.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.6e-50 202.6 228 50.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.6e-40 171.4 122 72.1
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.6e-38 164.1 249 41.0
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.3e-34 151.8 210 41.9
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.6e-32 143.7 112 67.0
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 7.5e-30 136.0 77 92.2
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.3e-25 120.6 158 56.3
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 3.9e-18 97.1 60 80.0
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.2e-11 75.5 163 36.8
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 6.2e-08 63.2 169 30.2


User provided reference genes

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