Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.7e-190 668.3 407 100.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 5.2e-152 541.6 407 82.1
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 2.6e-143 512.7 407 77.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.9e-142 509.2 407 75.9
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-139 500.4 407 74.9
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.4e-128 463.0 412 70.4
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.9e-125 453.4 404 69.3
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.7e-123 444.5 408 59.1
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 5.7e-122 441.8 408 63.0
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.2e-121 438.0 424 65.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.5e-119 432.2 410 65.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.7e-119 431.4 410 65.9
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.0e-118 428.7 415 63.4
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 8.8e-115 417.9 410 64.1
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.5e-114 417.2 411 65.5
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.8e-113 412.9 415 62.7
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 6.3e-113 411.8 428 68.2
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 6.3e-113 411.8 416 63.0
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.4e-112 409.8 410 66.6
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.1e-112 409.5 409 59.4
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 6.9e-112 408.3 415 56.1
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.2e-110 403.3 420 63.1
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.9e-110 402.9 407 60.0
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.5e-109 399.8 403 57.1
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.2e-109 399.4 400 59.5
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 5.5e-109 398.7 412 63.3
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.3e-105 385.2 423 58.2
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.4e-104 384.0 410 56.6
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 9.1e-104 381.3 416 63.9
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.0e-102 377.9 421 60.3
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.9e-102 376.3 423 65.5
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 6.5e-102 375.2 410 53.4
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 8.5e-102 374.8 410 58.0
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.5e-102 374.8 414 61.4
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.4e-101 374.0 418 55.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.0e-98 363.6 416 63.5
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 3.7e-97 359.4 408 62.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.4e-96 357.5 410 56.8
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.4e-96 357.5 417 54.9
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 1.6e-95 354.0 407 51.4
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.0e-95 353.6 409 53.3
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.5e-95 352.4 409 63.6
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.9e-95 352.1 433 53.1
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.0e-94 351.3 407 55.3
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.1e-93 347.8 414 62.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.9e-93 347.1 413 60.5
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.0e-91 339.3 407 57.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 6.7e-91 338.6 422 54.3
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.5e-90 337.4 407 58.2
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.5e-90 337.4 413 53.5
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-86 324.7 411 48.2
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.5e-85 320.9 428 47.4
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 9.4e-85 318.2 407 54.5
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-82 310.5 416 57.7
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.0e-82 310.5 415 51.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.4e-80 304.3 413 48.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.5e-79 299.3 409 58.9
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 4.5e-79 299.3 410 45.1
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-78 297.7 415 56.9
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 6.8e-75 285.4 416 53.4
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-71 274.6 409 57.0
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-71 274.6 409 57.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.0e-71 273.9 408 54.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-70 271.2 410 48.8
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.9e-70 270.0 408 55.1
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.0e-66 257.3 338 53.0
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 4.9e-65 252.7 340 52.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.2e-56 221.9 253 49.0
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 3.0e-54 216.9 250 62.4
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.3e-53 213.4 478 41.6
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 2.1e-52 210.7 174 73.0
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.4e-49 199.1 338 44.4
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 7.8e-47 192.2 424 34.7
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 3.9e-46 189.9 454 39.0
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 5.8e-42 176.0 336 45.5
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.3e-41 174.9 276 48.9
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.7e-41 174.5 144 56.2
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.1e-39 167.5 287 39.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.7e-39 167.2 457 38.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 3.5e-39 166.8 287 39.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-38 165.2 325 36.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.3e-38 164.9 147 55.1
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.3e-38 164.1 287 38.7
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 3.0e-38 163.7 147 55.1
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.0e-38 163.7 132 59.1
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 6.6e-38 162.5 125 60.0
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.7e-38 162.2 273 39.6
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.5e-37 161.4 146 53.4
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.5e-37 161.4 459 39.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.5e-37 161.4 154 51.9
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.9e-37 161.0 278 39.2
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.9e-37 161.0 271 40.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.9e-37 161.0 259 40.2
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.3e-37 160.2 120 60.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.3e-37 159.8 120 60.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.3e-37 159.8 120 60.0
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.6e-37 159.5 128 57.8
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 9.6e-37 158.7 129 57.4
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.3e-36 158.3 284 38.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.6e-36 157.9 147 51.7
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-36 157.9 149 52.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.8e-36 157.1 154 51.3
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.8e-36 157.1 154 51.3
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.6e-36 156.8 457 37.0
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.8e-36 156.4 125 56.0
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 4.8e-36 156.4 284 37.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 6.2e-36 156.0 115 59.1
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 8.1e-36 155.6 291 39.2
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.1e-35 155.2 231 42.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.4e-35 154.8 96 80.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.4e-35 154.8 121 57.0
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.4e-35 154.8 121 57.0
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.4e-35 154.1 125 56.8
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 3.1e-35 153.7 142 52.1
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.1e-35 153.7 127 56.7
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 4.0e-35 153.3 119 58.0
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.0e-35 153.3 137 54.7
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.0e-35 153.3 122 55.7
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 5.3e-35 152.9 456 35.5
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 6.9e-35 152.5 264 36.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-34 151.0 461 34.1
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-34 151.0 461 34.1
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.4e-34 150.2 446 35.7
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.4e-34 149.8 444 35.1
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 9.9e-34 148.7 279 35.5
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.3e-33 148.3 285 35.4
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-33 148.3 215 41.9
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.7e-33 147.9 416 32.0
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.9e-33 147.1 121 54.5
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 3.8e-33 146.7 215 41.4
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.9e-33 146.4 274 36.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 6.4e-33 146.0 280 36.1
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.4e-33 146.0 428 35.7
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-32 145.2 268 38.4
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.4e-32 144.8 265 38.5
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.4e-32 144.1 128 55.5
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 2.4e-32 144.1 444 37.4
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.4e-32 144.1 454 35.0
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.4e-32 144.1 418 35.2
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.2e-32 143.7 434 38.0
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 7.1e-32 142.5 451 37.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 9.3e-32 142.1 151 49.0
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.2e-31 141.7 455 35.2
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.6e-31 141.4 435 34.9
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.0e-31 139.4 468 36.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.7e-30 137.9 439 35.1
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.3e-30 137.5 435 35.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.5e-29 134.8 454 34.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.5e-29 134.0 454 35.0
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.3e-29 133.7 449 33.2
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 9.6e-29 132.1 104 57.7
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.8e-28 129.8 104 57.7
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.8e-28 129.8 104 57.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.8e-27 127.9 474 34.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.1e-27 127.1 252 35.7
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 5.3e-27 126.3 397 35.0
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 4.5e-26 123.2 261 36.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.9e-25 120.6 458 33.4
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.1e-15 87.8 257 30.4
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.3e-09 68.6 50 66.0


User provided reference genes

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