Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 4.9e-143 511.1 262 100.0
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.0e-59 233.4 187 71.7
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.3e-55 220.7 179 69.8
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 4.4e-51 205.7 179 67.0
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.2e-49 199.5 180 63.9
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 5.4e-49 198.7 179 64.2
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.0e-48 196.8 179 63.7
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.0e-48 196.8 221 55.2
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 5.9e-48 195.3 178 60.1
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.3e-47 194.1 179 63.1
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 1.3e-47 194.1 221 55.2
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.9e-47 193.0 241 48.5
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 5.0e-47 192.2 219 54.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 6.6e-47 191.8 169 62.7
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.6e-47 191.8 178 62.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 8.6e-47 191.4 179 63.1
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.1e-46 191.0 179 62.0
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.5e-46 190.7 177 58.2
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.9e-46 190.3 178 58.4
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 1.9e-46 190.3 177 58.2
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.5e-46 189.9 184 60.9
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 3.3e-46 189.5 182 58.2
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.3e-46 189.5 182 58.2
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 3.3e-46 189.5 178 59.0
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 9.5e-46 188.0 178 58.4
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 9.5e-46 188.0 177 58.8
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 9.5e-46 188.0 186 59.1
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.2e-45 187.6 178 56.7
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 2.1e-45 186.8 176 60.8
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.8e-45 186.4 182 60.4
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 3.6e-45 186.0 178 57.9
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.0e-44 184.5 184 56.5
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.4e-44 184.1 184 59.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.4e-44 184.1 177 58.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.3e-44 183.3 183 55.7
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 3.1e-44 183.0 179 57.0
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 4.0e-44 182.6 179 58.1
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 4.0e-44 182.6 195 54.9
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 5.2e-44 182.2 179 57.0
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 6.8e-44 181.8 208 51.4
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 6.8e-44 181.8 184 59.8
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 1.2e-43 181.0 180 56.1
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.2e-43 181.0 229 49.8
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.2e-43 181.0 226 49.6
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 1.5e-43 180.6 179 57.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 2.0e-43 180.3 179 57.0
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.6e-43 179.9 182 59.3
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 3.4e-43 179.5 186 53.8
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.5e-43 178.3 190 54.7
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.5e-43 178.3 191 56.0
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 7.5e-43 178.3 191 56.0
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 7.5e-43 178.3 191 56.0
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 7.5e-43 178.3 179 56.4
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 9.8e-43 177.9 179 55.9
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.3e-42 177.6 179 58.1
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 2.2e-42 176.8 182 55.5
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.9e-42 176.4 182 55.5
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 2.9e-42 176.4 179 56.4
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 6.4e-42 175.3 183 54.1
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 8.3e-42 174.9 191 56.0
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 8.3e-42 174.9 179 56.4
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.9e-41 173.7 179 53.6
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.9e-41 173.7 185 53.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 3.2e-41 172.9 153 66.0
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 5.4e-41 172.2 185 53.0
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 9.2e-41 171.4 180 57.8
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.2e-40 171.0 189 51.3
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 1.2e-40 171.0 178 58.4
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 2.0e-40 170.2 178 56.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 2.0e-40 170.2 174 56.9
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 6.0e-40 168.7 178 57.3
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 7.8e-40 168.3 181 54.1
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.3e-39 167.5 181 55.8
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.7e-39 167.2 183 51.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 3.0e-39 166.4 186 51.1
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 3.0e-39 166.4 186 51.1
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 5.0e-39 165.6 181 54.1
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 8.6e-39 164.9 180 55.6
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 2.5e-38 163.3 180 54.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 2.5e-38 163.3 183 54.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.3e-38 162.9 195 49.7
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 3.3e-38 162.9 195 49.7
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 7.3e-38 161.8 180 55.0
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 7.3e-38 161.8 180 53.9
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 7.3e-38 161.8 180 53.3
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 1.2e-37 161.0 192 51.0
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.8e-37 159.8 180 54.4
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.8e-37 159.8 180 55.0
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 4.7e-37 159.1 180 53.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.1e-36 157.9 191 48.2
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 1.1e-36 157.9 180 50.0
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.0e-35 153.7 167 51.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 9.8e-35 151.4 183 49.2
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.3e-34 151.0 200 46.0
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 6.4e-34 148.7 185 48.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.1e-33 147.9 177 46.9
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 9.2e-33 144.8 176 54.5
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.2e-32 144.4 150 58.0
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.0e-31 141.4 185 47.0
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.0e-31 141.4 189 46.0
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 6.6e-31 138.7 182 47.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 1.2e-29 134.4 163 49.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 4.7e-29 132.5 180 45.6
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 8.9e-28 128.3 150 51.3
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 5.8e-27 125.6 222 41.0
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 4.9e-26 122.5 126 57.1
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 9.2e-25 118.2 179 46.9
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.2e-24 117.9 112 57.1
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 6.0e-24 115.5 185 42.2
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.7e-23 114.0 199 38.2
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 3.3e-22 109.8 173 38.7
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 3.4e-19 99.8 175 36.6
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 2.2e-18 97.1 175 36.6
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.7e-15 87.4 153 37.3
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.2e-11 74.7 63 65.1
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 7.1e-09 65.5 63 52.4


User provided reference genes

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