Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.2e-168 595.5 422 100.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 6.7e-118 428.3 302 75.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.1e-80 304.7 297 56.2
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.1e-80 304.7 300 58.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.5e-80 303.5 309 58.6
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 7.3e-80 302.0 288 59.7
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.1e-79 300.4 295 59.3
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 5.8e-77 292.4 296 58.8
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-76 291.2 286 58.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 7.0e-75 285.4 309 56.0
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 9.2e-75 285.0 295 55.6
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.0e-73 281.6 309 51.8
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.3e-73 281.2 334 50.3
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.1e-72 278.1 296 55.4
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.3e-72 276.6 304 55.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.6e-72 275.8 296 55.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.6e-72 275.8 299 57.2
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.6e-71 274.2 293 54.3
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.7e-71 272.7 296 53.7
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 4.7e-71 272.7 296 53.7
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-71 271.9 325 50.5
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.0e-71 271.9 325 50.5
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.3e-70 270.4 295 55.9
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.2e-69 268.1 296 53.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.4e-69 266.5 294 53.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.2e-68 263.8 295 56.6
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 8.3e-68 261.9 289 54.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.4e-67 259.2 301 52.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 7.0e-67 258.8 293 51.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.2e-66 258.1 306 52.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.6e-66 257.7 294 53.1
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.0e-66 255.8 291 52.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.3e-65 254.6 297 50.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.0e-65 253.4 298 52.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.5e-64 251.1 294 53.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.5e-64 251.1 292 51.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.5e-64 250.4 307 49.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.6e-64 249.2 298 51.3
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 3.6e-63 246.5 289 50.5
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.4e-62 244.6 215 63.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.4e-62 244.6 293 50.2
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.4e-62 244.6 296 50.0
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.3e-62 243.8 293 49.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 4.0e-62 243.0 291 49.5
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.8e-62 242.3 301 50.8
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.3e-60 238.0 308 48.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 6.4e-60 235.7 297 52.2
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.4e-59 234.6 279 49.8
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.2e-59 233.4 306 48.7
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.1e-59 233.0 312 45.8
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 4.1e-59 233.0 303 49.2
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 7.1e-59 232.3 340 43.8
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.7e-58 230.3 295 48.8
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 6.0e-58 229.2 297 49.2
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.9e-57 226.5 301 49.2
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.6e-57 225.7 295 46.4
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 8.6e-57 225.3 303 47.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.1e-56 224.9 290 48.3
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.3e-56 223.4 291 46.7
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.3e-56 223.0 226 58.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 5.6e-56 222.6 288 49.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.5e-56 221.9 216 59.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 9.5e-56 221.9 304 46.7
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.6e-55 221.1 289 49.8
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.1e-55 220.7 289 48.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.1e-55 220.7 263 53.6
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-55 220.3 302 44.4
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-55 220.3 302 44.4
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.8e-55 220.3 290 49.0
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 4.7e-55 219.5 295 47.1
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.7e-55 219.5 216 59.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.1e-54 218.4 296 47.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-54 218.4 296 47.3
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.1e-54 218.4 289 48.4
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-54 218.0 301 46.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 1.4e-54 218.0 301 47.5
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-54 217.2 296 47.6
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.0e-54 216.5 296 47.6
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 5.2e-54 216.1 293 48.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 6.8e-54 215.7 292 46.2
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 8.9e-54 215.3 292 47.9
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.4e-53 213.4 294 45.9
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 7.6e-53 212.2 310 44.5
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 7.6e-53 212.2 291 47.1
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 7.6e-53 212.2 283 49.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 9.9e-53 211.8 271 49.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.3e-52 211.5 290 47.9
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.3e-52 211.5 295 48.5
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.3e-52 211.5 291 46.7
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 2.9e-52 210.3 300 45.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.8e-52 209.9 211 56.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.9e-52 209.5 292 46.6
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 8.4e-52 208.8 273 49.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.1e-51 208.4 317 43.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.4e-51 208.0 288 46.5
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.9e-51 207.6 304 43.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.9e-51 207.6 297 45.8
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.4e-51 207.2 293 47.4
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.4e-51 207.2 287 47.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.4e-51 207.2 295 46.4
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.2e-51 206.8 300 47.7
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 3.2e-51 206.8 287 47.4
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.2e-51 206.8 295 45.8
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 4.2e-51 206.5 295 46.8
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 4.2e-51 206.5 298 47.3
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 4.2e-51 206.5 293 44.4
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 5.4e-51 206.1 296 46.3
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 5.4e-51 206.1 295 46.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.4e-51 206.1 299 46.8
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.1e-51 205.7 287 49.1
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.5e-50 203.4 156 67.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.5e-50 203.4 299 45.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.5e-50 203.4 289 46.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.6e-50 203.0 296 43.9
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.8e-50 202.2 302 43.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.8e-50 202.2 296 47.6
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.0e-49 201.8 300 44.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.3e-49 200.7 300 42.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.1e-49 199.5 292 45.9
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.5e-48 198.0 276 46.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.5e-48 197.2 160 67.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 4.3e-48 196.4 297 44.8
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 5.6e-48 196.1 294 42.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.2e-47 194.9 290 43.4
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.6e-47 194.5 285 45.3
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.1e-47 194.1 287 45.3
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.7e-47 193.0 294 44.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 8.1e-47 192.2 299 43.8
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.3e-46 189.5 167 62.9
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 5.3e-46 189.5 299 42.8
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.7e-44 184.5 122 72.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.9e-44 183.7 292 45.9
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 6.4e-44 182.6 307 40.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 9.3e-43 178.7 131 65.6
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.2e-42 178.3 294 41.5
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.3e-41 174.1 218 49.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-39 168.3 167 58.1
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 6.9e-38 162.5 304 41.1
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.2e-35 153.7 135 59.3
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.2e-34 151.8 180 47.2
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.6e-34 151.4 260 42.3
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.0e-34 149.4 288 39.2
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 5.1e-33 146.4 287 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.1e-32 145.2 117 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.5e-32 144.8 126 57.9
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.1e-30 138.7 247 39.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.8e-30 137.9 132 53.8
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.5e-29 134.8 179 44.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.4e-29 133.7 179 45.3
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.2e-28 131.0 133 54.1
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.3e-24 117.1 166 38.6
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.7e-20 104.8 76 68.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.5e-19 100.9 164 41.5
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.3e-12 78.6 154 42.2
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-12 77.4 109 45.0
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.8e-12 77.0 58 65.5
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.2e-10 72.0 120 39.2
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.7e-07 61.6 163 39.9
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 2.2e-07 61.2 58 56.9
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.4e-06 58.5 101 40.6
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.4e-06 57.8 130 36.2


User provided reference genes

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